View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20625_high_8 (Length: 477)
Name: NF20625_high_8
Description: NF20625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20625_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Original strand, 5906553 - 5907019
Alignment:
| Q |
1 |
aatgattttgttaagtctatttgaagcatgtttacaagacattcaatttgacagttgagttggtctggtctttaattttacgtagttttctgctgtgaag |
100 |
Q |
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| T |
5906553 |
aatgattttgttaagtctatttgaagcatgtttacaagacattcaatttgacagttgagttggtctggtctttaattttacgtagttttctgctgtaaag |
5906652 |
T |
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| Q |
101 |
tgatttctcattcttgatgcttaaggagatctctaaaacagtcagaaaatatgtattttcatggcattaccctgcgtaactgttgtacagtattaaacat |
200 |
Q |
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| T |
5906653 |
tgatttctcattcttgatgcttaaggagatctctaaaagagtcagaaaatatgtattttcatggcattaccctgcgtaactgttgtacagtattgaacat |
5906752 |
T |
|
| Q |
201 |
tgtttcatatttcaattatgttattttcgta----tagtatgctgttatcatcaattcaggctcattacaaatgcatcattgctaatgtcatttctatct |
296 |
Q |
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| T |
5906753 |
tgtttcatatttcaattatgttattttcgtatagctagtatgctgttatcatcaattcaggctcattacaaatgcatcattgctaatgtcatttttatct |
5906852 |
T |
|
| Q |
297 |
cctaaatattccacattaaatactt--aaattttaggataatctgctgtcaattttaagtttcatgagaccagcacaacacaataagctatacatagatc |
394 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5906853 |
cctaaatattccacattaaatacttaaaaattttaggataatctgctgtcaattttaagtttcatgagaccagcacaacacaataagttatacatagatc |
5906952 |
T |
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| Q |
395 |
taaacattaaaaggcttcataattttcattggcttaatctatgaatcttttattcggacaatattct |
461 |
Q |
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| T |
5906953 |
taaacattaaaaggcttcataattttcattggcttaatctatgaatcttttatacggacaatattct |
5907019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 5903069 - 5903138
Alignment:
| Q |
1 |
aatgattttgttaagtctatttgaagcatgtttacaagacattcaatttgacagttgagttggtctggtc |
70 |
Q |
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||||||||||| |||||||||||||||||| ||| ||||||||| |||| |||||||||||||||||||| |
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| T |
5903069 |
aatgattttgtcaagtctatttgaagcatgcttataagacattctatttcacagttgagttggtctggtc |
5903138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 338
Target Start/End: Original strand, 5903201 - 5903288
Alignment:
| Q |
250 |
aattcaggctcattacaaatgcatcattgctaatgtcatttctatctcctaaatattccacattaaatacttaaattttaggataatct |
338 |
Q |
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|||| |||||||||| ||||||||||||| ||||| || ||||||||||| ||||| ||||| ||||| |||||| || ||||||||| |
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| T |
5903201 |
aattaaggctcattataaatgcatcattgataatgccacttctatctcct-catatttcacataaaataattaaatatttggataatct |
5903288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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