View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20625_low_10 (Length: 477)
Name: NF20625_low_10
Description: NF20625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20625_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 5906577 - 5906281
Alignment:
| Q |
1 |
ttcaaatagacttaacaaaatcattccttaaagctagttttcatgcaccaaatttttccacttgtgtgctaattgagaaacagtctttctagaagaccca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5906577 |
ttcaaatagacttaacaaaatcattccttaaagctagttttcatgcaccaaatttttccacttgtgtgctaattgagaaacagtctttctagaagaccca |
5906478 |
T |
|
| Q |
101 |
tcttctttgagtgcattagtagctgcttctttcaattccttcatattattgcgcaatttctcacattcttccccttccatgagacacttgatcaccttac |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5906477 |
tcttcttgaagtgcattagtagctgcttctttcaattccttcatattattgcgcaatttctcacattcttccccttccatgagacacttgatcaccttag |
5906378 |
T |
|
| Q |
201 |
aaacctctatcctttccacaatgccattttcattaactcttggcctcactcccacctttaggccctcactcagcacaactgcattcattctctgctc |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5906377 |
aaacctctatcctttccacaatgccattttcattaactcttggcctcactcccacctttaggccctcactcagcacaaatgcattcattctctgctc |
5906281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 5903093 - 5902797
Alignment:
| Q |
1 |
ttcaaatagacttaacaaaatcattccttaaagctagttttcatgcaccaaatttttccacttgtgtgctaattgagaaacagtctttctagaagaccca |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
5903093 |
ttcaaatagacttgacaaaatcattccttaaagctagttttcatgcaccaaatttctccacttgagtgctaattgagaaatggtctttctagaagacccg |
5902994 |
T |
|
| Q |
101 |
tcttctttgagtgcattagtagctgcttctttcaattccttcatattattgcgcaatttctcacattcttccccttccatgagacacttgatcaccttac |
200 |
Q |
| |
|
||||||||||| |||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||| ||| |
|
|
| T |
5902993 |
tcttctttgagcgcattagtagaagcttcttttaattccttcatattattgcgcaaattctcacattcttctccttccatgagacccttgatcaatttag |
5902894 |
T |
|
| Q |
201 |
aaacctctatcctttccacaatgccattttcattaactcttggcctcactcccacctttaggccctcactcagcacaactgcattcattctctgctc |
297 |
Q |
| |
|
||| || |||||| ||||||||||| |||||||| |||||||||| |||||| || |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5902893 |
aaatttcctccctttcaacaatgccattatcattaacccttggcctcagtcccactttaaggccctcactcagcacaactgcattcattctttgctc |
5902797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 295 - 461
Target Start/End: Original strand, 5906851 - 5907019
Alignment:
| Q |
295 |
ctcctaaatattccacattaaatacttaaa--ttttaggataatctgctgtcaattttaagtttcatgagaccagcacaacacaataagctatacataga |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5906851 |
ctcctaaatattccacattaaatacttaaaaattttaggataatctgctgtcaattttaagtttcatgagaccagcacaacacaataagttatacataga |
5906950 |
T |
|
| Q |
393 |
tctaaacattaaaaggcttcataattttcattggcttaatctatgaatcttttattcggacaatattct |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5906951 |
tctaaacattaaaaggcttcataattttcattggcttaatctatgaatcttttatacggacaatattct |
5907019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 144; Significance: 2e-75; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 23 - 290
Target Start/End: Original strand, 2011129 - 2011396
Alignment:
| Q |
23 |
attccttaaagctagttttcatgcaccaaatttttccacttgtgtgctaattgagaaacagtctttctagaagacccatcttctttgagtgcattagtag |
122 |
Q |
| |
|
|||||||||| || ||||| |||||||||||| |||||||| ||| ||||||||||| ||||||| ||||||| |||||||||||||||||||||| || |
|
|
| T |
2011129 |
attccttaaatctggtttttctgcaccaaatttctccacttgagtgttaattgagaaatagtctttgtagaagatccatcttctttgagtgcattagaag |
2011228 |
T |
|
| Q |
123 |
ctgcttctttcaattccttcatattattgcgcaatttctcacattcttccccttccatgagacacttgatcaccttacaaacctctatcctttccacaat |
222 |
Q |
| |
|
| ||||||| |||||||||||||||||| ||||||||||||| ||||| ||||||||||||| ||||||||||||| |||||| | |||||| ||||| |
|
|
| T |
2011229 |
caacttcttttaattccttcatattattgtgcaatttctcacactcttctccttccatgagacgcttgatcaccttagcaacctccaccctttcgacaat |
2011328 |
T |
|
| Q |
223 |
gccattttcattaactcttggcctcactcccacctttaggccctcactcagcacaactgcattcattc |
290 |
Q |
| |
|
|||||||| |||||||||||||||| |||||| || ||||||||| ||| || |||||||||||||| |
|
|
| T |
2011329 |
accattttcgttaactcttggcctcagtcccactttaaggccctcagtcaccaaaactgcattcattc |
2011396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 36 - 297
Target Start/End: Complemental strand, 1969494 - 1969233
Alignment:
| Q |
36 |
agttttcatgcaccaaatttttccacttgtgtgctaattgagaaacagtctttctagaagacccatcttctttgagtgcattagtagctgcttctttcaa |
135 |
Q |
| |
|
||||||| | |||||||||| |||||||| |||||| |||||||| ||| ||| ||||||| ||||||||||||| |||||| | ||| |||||||| || |
|
|
| T |
1969494 |
agttttcctacaccaaatttctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttctttgattgcatttgaagcagcttcttttaa |
1969395 |
T |
|
| Q |
136 |
ttccttcatattattgcgcaatttctcacattcttccccttccatgagacacttgatcaccttacaaacctctatcctttccacaatgccattttcatta |
235 |
Q |
| |
|
||||||||| ||||||||||| ||||||| |||||| ||||||||||||| ||||||||||||| ||||||| |||||||||||||| ||||||||| |
|
|
| T |
1969394 |
ttccttcatgttattgcgcaacttctcaccttcttctccttccatgagacgcttgatcaccttaacaacctcttctctttccacaatgccgttttcatta |
1969295 |
T |
|
| Q |
236 |
actcttggcctcactcccacctttaggccctcactcagcacaactgcattcattctctgctc |
297 |
Q |
| |
|
||||||||||||| |||||| |||||||| |||||||||| ||| ||||||||| ||||||| |
|
|
| T |
1969294 |
actcttggcctcagtcccacttttaggccttcactcagcaaaacggcattcattttctgctc |
1969233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 37 - 297
Target Start/End: Original strand, 2004148 - 2004408
Alignment:
| Q |
37 |
gttttcatgcaccaaatttttccacttgtgtgctaattgagaaacagtctttctagaagacccatcttctttgagtgcattagtagctgcttctttcaat |
136 |
Q |
| |
|
|||||| | ||| |||||| |||||||| ||||||||||||||| ||| ||| ||||||| ||||||||||||| ||||| | ||| | |||||| ||| |
|
|
| T |
2004148 |
gttttcctacactaaatttctccacttgagtgctaattgagaaatagtgtttgtagaagaaccatcttctttgacagcattcgaagcagattcttttaat |
2004247 |
T |
|
| Q |
137 |
tccttcatattattgcgcaatttctcacattcttccccttccatgagacacttgatcaccttacaaacctctatcctttccacaatgccattttcattaa |
236 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||| |
|
|
| T |
2004248 |
tccttcatgttattgcgcaatttctcaccttcttccccttccatgagacacttgatcaccttagcaacctctaccctttccactatgccattttcattaa |
2004347 |
T |
|
| Q |
237 |
ctcttggcctcactcccacctttaggccctcactcagcacaactgcattcattctctgctc |
297 |
Q |
| |
|
| |||| ||||| |||||| ||||| || ||||||| || ||| ||||||||| ||||||| |
|
|
| T |
2004348 |
cacttgccctcaatcccacttttagtccttcactcaacaaaaccgcattcattttctgctc |
2004408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 16 - 290
Target Start/End: Complemental strand, 1965572 - 1965298
Alignment:
| Q |
16 |
caaaatcattccttaaagctagttttcatgcaccaaatttttccacttgtgtgctaattgagaaacagtctttctagaagacccatcttctttgagtgca |
115 |
Q |
| |
|
||||| ||||| ||||| ||||||||| |||||||||||| |||||||| ||| ||||||||| | ||||||| ||||||| |||||||||||||||||| |
|
|
| T |
1965572 |
caaaagcattcgttaaatctagttttcctgcaccaaatttctccacttgagtgttaattgagatatagtctttgtagaagatccatcttctttgagtgca |
1965473 |
T |
|
| Q |
116 |
ttagtagctgcttctttcaattccttcatattattgcgcaatttctcacattcttccccttccatgagacacttgatcaccttacaaacctctatccttt |
215 |
Q |
| |
|
|| | ||| || |||| || ||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| |||||| | ||||| |
|
|
| T |
1965472 |
ttggaagcaactccttttaactccttcatattattgtgcaatttctcacactcttctccttccatgagacacttgatcaccttagcaacctccacccttt |
1965373 |
T |
|
| Q |
216 |
ccacaatgccattttcattaactcttggcctcactcccacctttaggccctcactcagcacaactgcattcattc |
290 |
Q |
| |
|
| ||||| || ||||| ||||||||||| |||| |||||| || |||||| || ||| || |||||||||||||| |
|
|
| T |
1965372 |
cgacaataccgttttcgttaactcttggtctcagtcccactttaaggcccccagtcaccaaaactgcattcattc |
1965298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 46 - 297
Target Start/End: Original strand, 2007537 - 2007788
Alignment:
| Q |
46 |
caccaaatttttccacttgtgtgctaattgagaaacagtctttctagaagacccatcttctttgagtgcattagtagctgcttctttcaattccttcata |
145 |
Q |
| |
|
|||||||||| ||||||| |||||| |||||||| ||| ||| ||||||| ||||||||||||| |||||| | ||| |||||||| ||||||||||| |
|
|
| T |
2007537 |
caccaaatttctccacttaagtgctatttgagaaatagtttttgtagaagaaccatcttctttgactgcatttgaagcagcttcttttaattccttcatg |
2007636 |
T |
|
| Q |
146 |
ttattgcgcaatttctcacattcttccccttccatgagacacttgatcaccttacaaacctctatcctttccacaatgccattttcattaactcttggcc |
245 |
Q |
| |
|
|||||||| |||||||||| || || |||||||||||| |||||||||||||| |||||||| ||||||||| ||||||||||||||||| |||| || |
|
|
| T |
2007637 |
ttattgcgtaatttctcaccctcgtctccttccatgagatacttgatcaccttagcaacctctaccctttccactatgccattttcattaacacttgccc |
2007736 |
T |
|
| Q |
246 |
tcactcccacctttaggccctcactcagcacaactgcattcattctctgctc |
297 |
Q |
| |
|
||| |||||| ||||| || ||||||| || ||| ||||||||| ||||||| |
|
|
| T |
2007737 |
tcagtcccacttttagtccttcactcaacaaaaccgcattcattttctgctc |
2007788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 11 - 297
Target Start/End: Complemental strand, 2437313 - 2437033
Alignment:
| Q |
11 |
cttaacaaaatcattccttaaagctagttttcatgcaccaaatttttccacttgtgtgctaattgagaaacagtctttctagaagacccatcttctttga |
110 |
Q |
| |
|
|||| ||||||||||||||||| || |||||| |||||||| || |||||||| ||| ||||||||||| ||||||| | ||||| ||||||||||||| |
|
|
| T |
2437313 |
cttatcaaaatcattccttaaaacttgttttcctgcaccaagcttctccacttgagtgttaattgagaaatagtctttgtcgaagaaccatcttctttga |
2437214 |
T |
|
| Q |
111 |
gtgcattagtagctgcttctttcaattccttcatattattgcgcaatttctcacattcttccccttccatgagacacttgatcaccttacaaacctctat |
210 |
Q |
| |
|
||||||||| ||| |||||||| | ||| ||||||||| | | | ||| |||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2437213 |
gtgcattagaagcagcttcttttagttctttcatattactccac--tttag----ttcttctccttccatgagacacttgatcaccttagcaacctctac |
2437120 |
T |
|
| Q |
211 |
cctttccacaatgccattttcattaactcttggcctcactcccacctttaggccctcactcagcacaactgcattcattctctgctc |
297 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||||| ||||| |||||||||| || ||| | |||| |||||||||| |
|
|
| T |
2437119 |
cctttccacaatgccattttcatgaactcttggcctcagtcccacttttagtccctcactcaacaaaaccgaattcgttctctgctc |
2437033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 57 - 297
Target Start/End: Complemental strand, 1963861 - 1963621
Alignment:
| Q |
57 |
tccacttgtgtgctaattgagaaacagtctttctagaagacccatcttctttgagtgcattagtagctgcttctttcaattccttcatattattgcgcaa |
156 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||| ||| ||| ||||||||||| || || || |||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
1963861 |
tccacttgagtgctaattgagaaagagtctttgtagtagaaccatcttctttatgtacactactagcagcttctttaaattccttcatattattacgcag |
1963762 |
T |
|
| Q |
157 |
tttctcacattcttccccttccatgagacacttgatcaccttacaaacctctatcctttccacaatgccattttcattaactcttggcctcactcccacc |
256 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||| || | || |||| |||||||||||||||||| || |||||||||||||||| |||||| |
|
|
| T |
1963761 |
tttcccaccttcttccccttccatgagacacttgatcaactcagcaatttctaccctttccacaatgccattctcgttaactcttggcctcagtcccact |
1963662 |
T |
|
| Q |
257 |
tttaggccctcactcagcacaactgcattcattctctgctc |
297 |
Q |
| |
|
|||||||| |||| |||| ||||||||| |||||||||| |
|
|
| T |
1963661 |
tttaggccttcacagagcaaaactgcatttgttctctgctc |
1963621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 47 - 297
Target Start/End: Original strand, 2017941 - 2018191
Alignment:
| Q |
47 |
accaaatttttccacttgtgtgctaattgagaaacagtctttctagaagacccatcttctttgagtgcattagtagctgcttctttcaattccttcatat |
146 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||| |||||| || |||| ||||| ||||| ||||| || |||| | |||||| ||||||||||||| |
|
|
| T |
2017941 |
accaaatttctccacttgagtgctaattgagaaagtgtctttgtaaaagatccatcatctttatgtgcactattagcagattcttttaattccttcatat |
2018040 |
T |
|
| Q |
147 |
tattgcgcaatttctcacattcttccccttccatgagacacttgatcaccttacaaacctctatcctttccacaatgccattttcattaactcttggcct |
246 |
Q |
| |
|
| ||||||| |||| ||| ||||||||||||||||||||||||||| | || || | || | |||||||||||||||| | ||||| | ||||||| |
|
|
| T |
2018041 |
ttttgcgcagtttcccaccttcttccccttccatgagacacttgattaactctgcaatttgtaccttttccacaatgccattctgattaatttttggcct |
2018140 |
T |
|
| Q |
247 |
cactcccacctttaggccctcactcagcacaactgcattcattctctgctc |
297 |
Q |
| |
|
|| |||||| ||||| || ||||||| || ||| |||||| |||||||||| |
|
|
| T |
2018141 |
cagtcccacttttagtccttcactcaacaaaaccgcattcgttctctgctc |
2018191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 69 - 297
Target Start/End: Original strand, 2014580 - 2014808
Alignment:
| Q |
69 |
ctaattgagaaacagtctttctagaagacccatcttctttgagtgcattagtagctgcttctttcaattccttcatattattgcgcaatttctcacattc |
168 |
Q |
| |
|
|||||||||||| ||||||| ||| |||||| || ||||| ||||| || |||| | |||||| |||||||||||||| ||||||| |||| ||| ||| |
|
|
| T |
2014580 |
ctaattgagaaagagtctttgtagcagacccgtcatctttatgtgcactattagcagattcttttaattccttcatatttttgcgcagtttcccaccttc |
2014679 |
T |
|
| Q |
169 |
ttccccttccatgagacacttgatcaccttacaaacctctatcctttccacaatgccattttcattaactcttggcctcactcccacctttaggccctca |
268 |
Q |
| |
|
|||||||||||||||||||||||| | || || | || | |||||||||||||||| | ||||| | ||||||||| |||||| ||||| || ||| |
|
|
| T |
2014680 |
ttccccttccatgagacacttgattaactctgcaatttgtaccttttccacaatgccattctgattaatttttggcctcagtcccacttttagtccttca |
2014779 |
T |
|
| Q |
269 |
ctcagcacaactgcattcattctctgctc |
297 |
Q |
| |
|
|||| || ||| |||||| |||||||||| |
|
|
| T |
2014780 |
ctcaacaaaaccgcattcgttctctgctc |
2014808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 119
Target Start/End: Original strand, 5890603 - 5890670
Alignment:
| Q |
52 |
atttttccacttgtgtgctaattgagaaacagtctttctagaagacccatcttctttgagtgcattag |
119 |
Q |
| |
|
|||| |||||||| ||||||||||||||| | | ||| ||||||| |||||||||||||||||||||| |
|
|
| T |
5890603 |
atttctccacttgagtgctaattgagaaaaaatgtttgtagaagaaccatcttctttgagtgcattag |
5890670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University