View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20625_low_11 (Length: 467)

Name: NF20625_low_11
Description: NF20625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20625_low_11
NF20625_low_11
[»] chr6 (14 HSPs)
chr6 (20-466)||(5253715-5254153)
chr6 (149-467)||(5065245-5065563)
chr6 (168-457)||(5177930-5178210)
chr6 (187-467)||(5126460-5126743)
chr6 (351-457)||(5279755-5279861)
chr6 (351-457)||(5688901-5689007)
chr6 (151-240)||(5126352-5126441)
chr6 (351-467)||(5346210-5346326)
chr6 (168-219)||(5688716-5688767)
chr6 (351-433)||(5072680-5072762)
chr6 (169-219)||(5279990-5280040)
chr6 (353-435)||(5398259-5398341)
chr6 (351-435)||(5242510-5242594)
chr6 (179-227)||(5279907-5279955)
[»] chr3 (4 HSPs)
chr3 (353-467)||(47985393-47985507)
chr3 (353-467)||(48003967-48004081)
chr3 (353-467)||(47994680-47994794)
chr3 (353-467)||(48013252-48013366)
[»] chr7 (1 HSPs)
chr7 (351-467)||(36212919-36213035)
[»] chr4 (1 HSPs)
chr4 (398-466)||(25569022-25569090)


Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 20 - 466
Target Start/End: Complemental strand, 5254153 - 5253715
Alignment:
Q  20 aatctgaaaatagtaaaaaga-taaatccatactacaaacttcattaggagattcggtggatgtcatctttacttaccccacgacccaatccttcagaag 118  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||| ||||||  |||||||||||||| |||||||||||||||||||||||||||||    
T  5254153 aatctgaaaatagtaaaaaaaataaatccatactacaaacttcattaagagattacgtggatgtcatcttgacttaccccacgacccaatccttcagaag 5254054  T
Q  119 ccttctgagaatgtccgtccttctattatctgttaagtcatccatgggcgccacttgaggagagacttttctgacaaagcattcattttcttcatcacta 218  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||          ||||||||||||||||||||||||    
T  5254053 ccttctgagaatgtccgtccttctgttatctgttaagtcatccaagggcgccactttaggagagacc---------aagcattcattttcttcatcacta 5253963  T
Q  219 caaacaattgcttgattcttatattgtacattagaagagacacttctaacaaaacattcattttcatcacctctactaacaataacattcttatcttgtc 318  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||    
T  5253962 caaacaattggttgattcttatattgtgcattagaagagacacttctaacaaaacattcattttcataaccactactaacaataacattcatatcttgtc 5253863  T
Q  319 catgacactcctccgccttttcagcaatcggctcatcatatatgagataaactgttgtcctctccacaataaagtcgttctcaaaaacagctacaacctc 418  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||| |||||| ||   ||||||||||||| | |||| |||    
T  5253862 catgacactcctccgccttttcagcaatgggctcgtcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacaacaacaaactc 5253763  T
Q  419 cactttgtttccaggttgaatgcttgataatactctctgctcctcctc 466  Q
    |||||| |||||||||| ||| ||| |||||||||| ||| |||||||    
T  5253762 cactttatttccaggttcaatacttaataatactctttgcccctcctc 5253715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 149 - 467
Target Start/End: Original strand, 5065245 - 5065563
Alignment:
Q  149 tgttaagtcatccatgggcgccacttgaggagagacttttctgacaaagcattcattttcttcatcactacaaacaattgcttgattcttatattgtaca 248  Q
    ||||||||||||||  ||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||  ||||||| |||| ||    
T  5065245 tgttaagtcatccacaggaaccacttgaggagagacttttctgacaaagcattcattttcttcaccactacaaacaattgattcgttcttatgttgtgca 5065344  T
Q  249 ttagaagaga-cacttctaacaaaacattcattttcatcacctctactaacaataacattcttatcttgtccatgacactcctccgccttttcagcaatc 347  Q
    | |||||||| | |  |||  ||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||     
T  5065345 tgagaagagatctcgcctag-aaagcattcattttcatcaccgctactaacaataacattcttatcttgtgcatgacactcctcccccttttcagcaatt 5065443  T
Q  348 ggctcatcatatatgagataaactgttgtcctctccacaataaagtcgttctcaaaaacagctacaacctccactttgtttccaggttgaatgcttgata 447  Q
    || ||||||||||||||||||||||||||||||| |||||  ||  |||||||||||||| | ||||  |||||||| |||||||||| ||| |||||||    
T  5065444 ggttcatcatatatgagataaactgttgtcctcttcacaacgaaaccgttctcaaaaacaacaacaaaatccactttatttccaggttcaatacttgata 5065543  T
Q  448 atactctctgctcctcctca 467  Q
     |||||||||| ||||||||    
T  5065544 ctactctctgcccctcctca 5065563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 168 - 457
Target Start/End: Complemental strand, 5178210 - 5177930
Alignment:
Q  168 gccacttgaggagagacttttctgacaaagcattcattttcttcatcactacaaacaattgcttgattcttatattgtacattagaagagacacttctaa 267  Q
    ||||||||||||||||| ||||||||||  ||||||||||| ||| |||||| ||||||  |   ||| | || |||| |||||||||||||   ||| |    
T  5178210 gccacttgaggagagacatttctgacaacacattcattttcatcaccactactaacaatgac---attgtaatcttgtgcattagaagagacttctctga 5178114  T
Q  268 caaaacattcattttcatcacctctactaacaataacattcttatcttgtccatgacactcctccgccttttcagcaatcggctcatcatatatgagata 367  Q
    |||| ||||||| ||||||||| ||||  |||||    |||||  ||||| | || || | ||||   |||||  |||| || |||||||||| ||||||    
T  5178113 caaagcattcatcttcatcaccactacacacaat----ttctt--cttgttcttggcattgctccattttttctccaattggttcatcatatacgagata 5178020  T
Q  368 aactgttgtcctctccacaataaagtcgttctcaaaaacagctacaacctccactttgtttccaggttgaatgcttgataatactctctg 457  Q
    |||||||||  ||| |||||| ||  |||||||||||||| | ||||||||||||||||| | |||||  || ||||||| |||||||||    
T  5178019 aactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatactactctctg 5177930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 187 - 467
Target Start/End: Original strand, 5126460 - 5126743
Alignment:
Q  187 ttctgacaaagcattcattttcttcatcactacaaacaattgcttgattcttatattgtacattagaagagacacttctaacaaaacattcattttcatc 286  Q
    |||||||||||| |||||||||||||||||||| |||||| | ||||||||| | || | ||| |||||||||   |||  |||| | |||| ||| |||    
T  5126460 ttctgacaaagccttcattttcttcatcactactaacaataggttgattcttttcttctgcatgagaagagacctctctttcaaagctttcagttttatc 5126559  T
Q  287 acctctactaacaataacattcttatct---tgtccatgacactcctccgccttttcagcaatcggctcatcatatatgagataaactgttgtcctctcc 383  Q
    ||| |||| |||| |||||||||||| |    || ||||||| | || |    ||||| |||| || |||||||||||||||||||| | |||| ||| |    
T  5126560 accactacaaacattaacattcttatatgtccgtgcatgacattgcttcatagtttcaccaattggttcatcatatatgagataaacagctgtcttcttc 5126659  T
Q  384 acaataaagtcgttctcaaaaacagctacaacctccactttgtttccaggttgaatgcttgataatactctctgctcctcctca 467  Q
    ||||| ||  |||||| ||||||| | |||| ||| |||||||| |||| ||  || ||||||| |||||||| | ||||||||    
T  5126660 acaatgaaaccgttcttaaaaacaacaacaatctcaactttgttaccagcttctatacttgatactactctctccccctcctca 5126743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 351 - 457
Target Start/End: Complemental strand, 5279861 - 5279755
Alignment:
Q  351 tcatcatatatgagataaactgttgtcctctccacaataaagtcgttctcaaaaacagctacaacctccactttgtttccaggttgaatgcttgataata 450  Q
    |||||||||| |||||||||||||||  ||| |||||| ||  |||||||||||||| | ||||||||||||||||| | |||||  || ||||||| ||    
T  5279861 tcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatacta 5279762  T
Q  451 ctctctg 457  Q
    |||||||    
T  5279761 ctctctg 5279755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 351 - 457
Target Start/End: Original strand, 5688901 - 5689007
Alignment:
Q  351 tcatcatatatgagataaactgttgtcctctccacaataaagtcgttctcaaaaacagctacaacctccactttgtttccaggttgaatgcttgataata 450  Q
    |||||||||| |||||||||||||||  ||| |||||| ||  |||||||||||||||  ||||||||||||||||| | |||||  || ||||||| ||    
T  5688901 tcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacagaaacaacctccactttgttacaaggttctatacttgatacta 5689000  T
Q  451 ctctctg 457  Q
    |||||||    
T  5689001 ctctctg 5689007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 151 - 240
Target Start/End: Original strand, 5126352 - 5126441
Alignment:
Q  151 ttaagtcatccatgggcgccacttgaggagagacttttctgacaaagcattcattttcttcatcactacaaacaattgcttgattcttat 240  Q
    |||| ||||| ||||| |||||||||||||| || || |||||||||| ||| ||||||||| ||||||||||||||| || ||||||||    
T  5126352 ttaaatcatcaatgggagccacttgaggagataccttcctgacaaagccttccttttcttcagcactacaaacaattggttcattcttat 5126441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 351 - 467
Target Start/End: Complemental strand, 5346326 - 5346210
Alignment:
Q  351 tcatcatatatgagataaactgttgtcctctccacaataaagtcgttctcaaaaacagctacaacctccactttgtttccaggttgaatgcttgataata 450  Q
    ||||||||||||||||||| || |||| ||| |||||| ||  | ||||||| |||| | ||||||||||||||||| |||||||  || |||||||  |    
T  5346326 tcatcatatatgagataaattgctgtcttcttcacaatgaaaccattctcaataacaacgacaacctccactttgttaccaggttctatacttgatacaa 5346227  T
Q  451 ctctctgctcctcctca 467  Q
    |||||||  ||||||||    
T  5346226 ctctctggccctcctca 5346210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 219
Target Start/End: Original strand, 5688716 - 5688767
Alignment:
Q  168 gccacttgaggagagacttttctgacaaagcattcattttcttcatcactac 219  Q
    ||||||||||||||||| ||||||||||  ||||||||||| ||| ||||||    
T  5688716 gccacttgaggagagacatttctgacaacacattcattttcatcaccactac 5688767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 433
Target Start/End: Original strand, 5072680 - 5072762
Alignment:
Q  351 tcatcatatatgagataaactgttgtcctctccacaataaagtcgttctcaaaaacagctacaacctccactttgtttccagg 433  Q
    ||||| ||||||||||||| | ||||| | | |||||| || |||||||||| |||| | ||||||||||||| ||| |||||    
T  5072680 tcatcgtatatgagataaattattgtctttttcacaatgaaatcgttctcaacaacaacgacaacctccacttggttaccagg 5072762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 5280040 - 5279990
Alignment:
Q  169 ccacttgaggagagacttttctgacaaagcattcattttcttcatcactac 219  Q
    |||||||||||||||| ||||||||||  ||||||||||| ||| ||||||    
T  5280040 ccacttgaggagagacatttctgacaacacattcattttcatcaccactac 5279990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 435
Target Start/End: Complemental strand, 5398341 - 5398259
Alignment:
Q  353 atcatatatgagataaactgttgtcctctccacaataaagtcgttctcaaaaacagctacaacctccactttgtttccaggtt 435  Q
    ||||||||  ||||||||||||||| ||| |||||| || || ||||| ||||||   |||||||| |||||||| |||||||    
T  5398341 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcgaaaacaaagacaacctcaactttgttaccaggtt 5398259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 435
Target Start/End: Original strand, 5242510 - 5242594
Alignment:
Q  351 tcatcatatatgagataaactgttgtcctctccacaataaagtcgttctcaaaaacagctacaacctccactttgtttccaggtt 435  Q
    |||||||||| ||||||||||  |||| ||| |||||| ||   |||||||||||||   || |||||||||||||| |||||||    
T  5242510 tcatcatatacgagataaactactgtcttcttcacaatgaaactgttctcaaaaacaaaaacgacctccactttgttaccaggtt 5242594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 5279955 - 5279907
Alignment:
Q  179 agagacttttctgacaaagcattcattttcttcatcactacaaacaatt 227  Q
    |||||||| ||||||||||||||||| ||| ||| ||||||| ||||||    
T  5279955 agagacttctctgacaaagcattcatcttcatcaccactacacacaatt 5279907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 467
Target Start/End: Original strand, 47985393 - 47985507
Alignment:
Q  353 atcatatatgagataaactgttgtcctctccacaataaagtcgttctcaaaaacagctacaacctccactttgtttccaggttgaatgcttgataatact 452  Q
    ||||||||  |||||||||| | |||||| |||||| ||  | |||||||||||| | || |||||||||||||| || ||||  || ||||||| ||||    
T  47985393 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact 47985492  T
Q  453 ctctgctcctcctca 467  Q
    |||| | ||||||||    
T  47985493 ctctccccctcctca 47985507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 467
Target Start/End: Original strand, 48003967 - 48004081
Alignment:
Q  353 atcatatatgagataaactgttgtcctctccacaataaagtcgttctcaaaaacagctacaacctccactttgtttccaggttgaatgcttgataatact 452  Q
    ||||||||  |||||||||| | |||||| |||||| ||  | |||||||||||| | || |||||||||||||| || ||||  || ||||||| ||||    
T  48003967 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact 48004066  T
Q  453 ctctgctcctcctca 467  Q
    |||| | ||||||||    
T  48004067 ctctccccctcctca 48004081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 467
Target Start/End: Original strand, 47994680 - 47994794
Alignment:
Q  353 atcatatatgagataaactgttgtcctctccacaataaagtcgttctcaaaaacagctacaacctccactttgtttccaggttgaatgcttgataatact 452  Q
    ||||||||  |||||||||| | |||||| |||||| ||  | |||||||||||| | || |||||||||||||| || | ||  || ||||||| ||||    
T  47994680 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactact 47994779  T
Q  453 ctctgctcctcctca 467  Q
    |||| | ||||||||    
T  47994780 ctctccccctcctca 47994794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 467
Target Start/End: Original strand, 48013252 - 48013366
Alignment:
Q  353 atcatatatgagataaactgttgtcctctccacaataaagtcgttctcaaaaacagctacaacctccactttgtttccaggttgaatgcttgataatact 452  Q
    ||||||||  |||||||||| | |||||| |||||| ||  | |||||||||||| | || |||||||||||||| || | ||  || ||||||| ||||    
T  48013252 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactact 48013351  T
Q  453 ctctgctcctcctca 467  Q
    |||| | ||||||||    
T  48013352 ctctccccctcctca 48013366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 467
Target Start/End: Original strand, 36212919 - 36213035
Alignment:
Q  351 tcatcatatatgagataaactgttgtcctctccacaataaagtcgttctcaaaaacagctacaacctccactttgtttccaggttgaatgcttgataata 450  Q
    |||||||| ||||||||||  | |||| ||| |||||| || | ||||||||||||| | |||||||||| ||| |  |||||||  || ||||||| ||    
T  36212919 tcatcataaatgagataaatcgctgtcttcttcacaatgaaattgttctcaaaaacaacaacaacctccattttatcaccaggttctatacttgatacta 36213018  T
Q  451 ctctctgctcctcctca 467  Q
     ||||||| ||||||||    
T  36213019 atctctgcccctcctca 36213035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 398 - 466
Target Start/End: Complemental strand, 25569090 - 25569022
Alignment:
Q  398 ctcaaaaacagctacaacctccactttgtttccaggttgaatgcttgataatactctctgctcctcctc 466  Q
    ||||||||||   |||||||||||||||||||||||||  || ||||||| |||| | ||| |||||||    
T  25569090 ctcaaaaacaaaaacaacctccactttgtttccaggttctatacttgatactactatatgcccctcctc 25569022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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