View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20625_low_12 (Length: 467)
Name: NF20625_low_12
Description: NF20625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20625_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 3e-61; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 191 - 326
Target Start/End: Original strand, 4656111 - 4656246
Alignment:
| Q |
191 |
cttatccaatgtcccgaaagcaatgattaacattctccaatttaaatatatcttcatatttatttccatcaaccaaacaaagtcttgtcaaccaccccca |
290 |
Q |
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| T |
4656111 |
cttatccaatgttccgaaggcaatgattaacattctctaatttaaatatatcttcatatttatttctatcaaccaaacaaagtcttgtcaaccaccccca |
4656210 |
T |
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| Q |
291 |
tctccaagacattgccggtttggactaaagccacca |
326 |
Q |
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| T |
4656211 |
tctccaagacattgccggtttggactaaagccacca |
4656246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 360 - 448
Target Start/End: Original strand, 4656280 - 4656368
Alignment:
| Q |
360 |
gtacaacaacacatcatgtgagagttttgctggtttctactttctccaccctgtcaatgcccaaaatctataagctccaatcatcttca |
448 |
Q |
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| T |
4656280 |
gtacaacaacacatcatgtgagagttttgctggtttctacttgctccaccctgtcaatgcccaaaatctataagctccaatcatcttca |
4656368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 232 - 326
Target Start/End: Complemental strand, 1039050 - 1038957
Alignment:
| Q |
232 |
ttaaatatatcttcatatttatttccatcaaccaaacaaagtcttgtcaaccacccccatctccaagacattgccggtttggactaaagccacca |
326 |
Q |
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| T |
1039050 |
ttaaatatatcgtcatatttatttccatcaaccaaacaaagtcttgtcaacca-ccccatctccaaaacattgctggtttggactaaagccacca |
1038957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 232 - 326
Target Start/End: Complemental strand, 1045956 - 1045863
Alignment:
| Q |
232 |
ttaaatatatcttcatatttatttccatcaaccaaacaaagtcttgtcaaccacccccatctccaagacattgccggtttggactaaagccacca |
326 |
Q |
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| T |
1045956 |
ttaaatatatcgtcatatttatttccatcaaccaaacaaagtcttgtcaacca-ccccatctccaaaacattgctggtttggactaaagccacca |
1045863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 360 - 446
Target Start/End: Complemental strand, 1038932 - 1038846
Alignment:
| Q |
360 |
gtacaacaacacatcatgtgagagttttgctggtttctactttctccaccctgtcaatgcccaaaatctataagctccaatcatctt |
446 |
Q |
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| T |
1038932 |
gtacaacaacacatcatgtgaaagttttgctggtttctaccttctccaccctgtcaatgaccaaaatctacaagctccaatcatctt |
1038846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 360 - 446
Target Start/End: Complemental strand, 1045838 - 1045752
Alignment:
| Q |
360 |
gtacaacaacacatcatgtgagagttttgctggtttctactttctccaccctgtcaatgcccaaaatctataagctccaatcatctt |
446 |
Q |
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| T |
1045838 |
gtacaacaacacatcatgtgaaagttttgctggtttctaccttctccaccctgtcaatgaccaaaatctacaagctccaatcatctt |
1045752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 4655948 - 4656018
Alignment:
| Q |
15 |
actgcatttggcttttaaaatatttaaatgagtctagctaaccattgccttcaaagcaatgattatagaag |
85 |
Q |
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| T |
4655948 |
actgcatttggcttttaaaatatttaaatgagtcgcgctaaccattgctctcaaagcaataattatagaag |
4656018 |
T |
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