View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20625_low_14 (Length: 460)
Name: NF20625_low_14
Description: NF20625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20625_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Original strand, 36939678 - 36940108
Alignment:
| Q |
18 |
agagtaagatttttgtgattagtcatattaggaaacacttgggatttgatatcaagactaaatatgcttcaatgattttgatagtgtcgtggacaaattg |
117 |
Q |
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| T |
36939678 |
agagtaagatttttgtgattagtcatattaggaaacacttgggatttgatatcaagactaaatatgcttcaatgattttgatagtgtcgtggacaaattg |
36939777 |
T |
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| Q |
118 |
tgcaatagaagctcaaaaatggatggaatatatttgtaataatttgaagaaaattgaaatgaacctgatcatgaattctattctttctgtcttcccttcc |
217 |
Q |
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| T |
36939778 |
tgcaatagaagctcaaaaatggatggaatatatttgtaataatttgaagaaaattgaaatgaacctgatcatgaattctattctttctgtcttcccttct |
36939877 |
T |
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| Q |
218 |
taccacatgtgtgtgtctcttcttcccaagagaatatatatgtgatttatttgatagctatagattgaatagaaacttcctcttcaaggcagactttggg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36939878 |
taccacatgtgtgtgtctcttcttcccaagagaatatatatgtgatttatttgatagctatagattgaatagaaacttcctcttcaaggcagactttggg |
36939977 |
T |
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| Q |
318 |
agggcctgggaataaggagtttcctttctttaatgaggttcgattcgactgcctgcccatttgccaagcttggataagatgtccttaactaagagaaatg |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36939978 |
agggcctgggaataaggagtttcctttctttaatgaggttctattcgactgcctgcccatttgccaagcttggataagatgtccttaactaagagaaatg |
36940077 |
T |
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| Q |
418 |
acttggggctgaagctctataggtatatctc |
448 |
Q |
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| T |
36940078 |
acttggggctgaagctctataggtatatctc |
36940108 |
T |
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