View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20625_low_15 (Length: 450)
Name: NF20625_low_15
Description: NF20625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20625_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 16 - 431
Target Start/End: Original strand, 20361810 - 20362219
Alignment:
| Q |
16 |
aaaggaaaacctgatctaacaactttccagactcatgttgttcaagatcctggtgttgatgttgttgatgttgatgtcaaaaagtttctcattaaaacct |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
20361810 |
aaaggaaaacctgatctaacaactttccagactcatgttgttcaagatcctggtgttgatattgttgatgttgatgtcaaaaagtttctcattaaaacct |
20361909 |
T |
|
| Q |
116 |
aatacaccccgccatggttatggttatggttatggttagtaatcataacaacatacccatcttttcattttaccgtacatatactttgctgctgctgcat |
215 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20361910 |
aatacaccccgccatgg------ttatggttatggttagtaatcataacaacatacccatcttttcattttaccgtacatatactttgctgctgctgcat |
20362003 |
T |
|
| Q |
216 |
tatatgtaatcacaccggtatgcccctaacccttgattatgtattccttttgcaggaatctacctgccatgaatatgcttgttttggttgcgctggaaag |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
20362004 |
tatatgtaatcacaccggtatgcccctaacccttgattatgtattccttttgcaggaatctacctgccatggatatgcttgttttggttgcgctggaaag |
20362103 |
T |
|
| Q |
316 |
acttgtttgtaggtgtagttaattaaataaatatgatgggtgtttatgactttatgtaccatggtatttctgtgtaattgggatgatatctctcactgtt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20362104 |
acttgtttgtaggtgtagttaattaaataaatatgatgggtgtttatgactttatgtaccatggtatttctgtgtaattgggatgatatctctcactgtt |
20362203 |
T |
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| Q |
416 |
tcatatgaacatatct |
431 |
Q |
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|||||||||||||||| |
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| T |
20362204 |
tcatatgaacatatct |
20362219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 5e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 141 - 286
Target Start/End: Original strand, 21549737 - 21549882
Alignment:
| Q |
141 |
atggttatggttagtaatcataacaacatacccatcttttcattttaccgtacatatactttgctgctgctgcattatatgtaatcacaccggtatgccc |
240 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||| |||||||||| |
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| T |
21549737 |
atggttatggttagtaatcataacaacatatccatcttttcattttaccatacatatacgttgctgctgctgcattatatttaatcacatcggtatgccc |
21549836 |
T |
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| Q |
241 |
ctaacccttgattatgtattccttttgcaggaatctacctgccatg |
286 |
Q |
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||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
21549837 |
ctaacccttaattatgcattccttttgcaggaatctacctgccatg |
21549882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 396 - 431
Target Start/End: Original strand, 21549882 - 21549917
Alignment:
| Q |
396 |
ggatgatatctctcactgtttcatatgaacatatct |
431 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
21549882 |
ggatgatatctctcactgtttcatatgaacatatct |
21549917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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