View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20625_low_16 (Length: 449)
Name: NF20625_low_16
Description: NF20625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20625_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 48453524 - 48453957
Alignment:
| Q |
1 |
aagatgaaattcagctgcttaagatgtgttgagtggctgagttatatttagagaagttgggaccataatagaaaaatgtaagcttnnnnnnntatcattc |
100 |
Q |
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| T |
48453524 |
aagatgaacttcagctgcttaagatgtgttgagtggctgagttatatttagagaagttgggaccagaatagaaaaatgtaagcttaaaaaaatatcattc |
48453623 |
T |
|
| Q |
101 |
aaaagagagagaaatgtgaacaattcactattccgacactttattactaacctttgaatagaagtccaattgcataagcataatctcaagttcaggaaga |
200 |
Q |
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| T |
48453624 |
aaaagagaaagaaatgtgaacaattcactattccaacactttattactaacctttgaatagaagtccaattgcataagcataatctcaagttcaggaaga |
48453723 |
T |
|
| Q |
201 |
gtggcaaagagagcaaatgcattaagatttaaggaagtgaatgctgttcaacaatgggttattaatgttcaagttatcaaaatcatatccatagtactcc |
300 |
Q |
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| T |
48453724 |
gtggcaaagagagcaaatgcattaagatttaaggaagtgaatgctgttcaacaatgggttattaatgttcaagttatcaaaatcatatccatagtactcc |
48453823 |
T |
|
| Q |
301 |
aatgaagtgagcttaaggaaaactatcgaactcagttttatatacatcgtgaagtcgcaggatatgacatagcatgatgacatacggatgaactcaatat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
48453824 |
aatgaagtgagcttaaggaaaactatcgaactcagttttatatacatcctgaagtcgcaggatatgaaatagcatgatgacataaggatgaactcaatat |
48453923 |
T |
|
| Q |
401 |
cttctgcattgatatcatgatttgaactcacaac |
434 |
Q |
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| T |
48453924 |
cttctgcattgatatcatgatttgaactcacaac |
48453957 |
T |
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