View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20625_low_17 (Length: 430)
Name: NF20625_low_17
Description: NF20625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20625_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 13 - 353
Target Start/End: Complemental strand, 4134319 - 4133979
Alignment:
| Q |
13 |
aaaatcaagcgccaattccaaaccgcgaaatttcaaaatttgatatatcttttaacattatcttgtataactcttttgttggattttgatgaattcaaac |
112 |
Q |
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| T |
4134319 |
aaaaacaagcgccaattccaaaccgcgaaatttcaaaatttgatatatcttttaacattatcttgtataactcttttgttggattttgatgaattcaaac |
4134220 |
T |
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| Q |
113 |
ccaaaccttcaaagcatcaattctcaggtacccttcttcatattcctctaatctaacctcttttcattattcatcttctcattttctttcgttctatctt |
212 |
Q |
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| T |
4134219 |
ccaaaccttcaaagcatcaattctcaggtacccttcttcatattcctctaatctaacctcttttcattattcatcttctcattttctttcgttctatctt |
4134120 |
T |
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| Q |
213 |
ttaggttccgagttcgatgtcgtcgccctcatgcccttctggtttgtatccataccttaaaataataaaacatggaaattgcaattaaaaatcaataatt |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4134119 |
ttaggttccgagttcgatgtcgtcgccctcatgcccttctggtttgtatccataccttacaataataaaacatggaaattgcaattaaaaatcaataatt |
4134020 |
T |
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| Q |
313 |
ttgagggttctaatttttaaacaataaaacctaaaaagtta |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
4134019 |
ttgagggttctaatttttaaacaataaaacctaaaaagtta |
4133979 |
T |
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