View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20625_low_18 (Length: 425)
Name: NF20625_low_18
Description: NF20625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20625_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 17 - 413
Target Start/End: Complemental strand, 37584575 - 37584175
Alignment:
| Q |
17 |
ttttcttctcttgagtagtttttcccctttataagttgtgttgggtgaattagtttcttcaattttatttttgtaatccagttgttgattgtagttgaaa |
116 |
Q |
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| T |
37584575 |
ttttcttctcttgagtagtttttcccctttataagttgtgttgggtgaattagtttcttcaattttatttttgtaatccagttgttgattgtagttgaaa |
37584476 |
T |
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| Q |
117 |
attttggatgatgataatagaataggatttgcacttgtttgttgctatgattttgtatcaaagtgaattggacattggtttttatttgagta----cata |
212 |
Q |
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| T |
37584475 |
attttggatgatgataatagaataggatttgcacttgtttgttgctatgattttgtatcaaagtgaattggacattggtttttatttgagtacatacata |
37584376 |
T |
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| Q |
213 |
ttttttaagaaagaaaagaagttgtcaagaacagaacaatttttgaattgtcccaaccctaaaaaatcaagtaatttaaagtaccgatgtggcgtaataa |
312 |
Q |
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| T |
37584375 |
tttttatagaaagaaaagaagttgtcaagaacagaacaatttttgaattgtcccaaccctaaaaaatcaagtaatttaaagtacagatgtggcgtaataa |
37584276 |
T |
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| Q |
313 |
tctgcttacgagattcctggattgcaaggggttctggattgtgtttgtggtatttcattcttcggacaaaactatgttgacaaaatctatgtttgtattt |
412 |
Q |
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| T |
37584275 |
tctgcttacaagattcatggattgcagggggatctggattgtgtttgtggtatttcattcttcggacaaaactatgttgacaaaatctatgtttgttttt |
37584176 |
T |
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| Q |
413 |
t |
413 |
Q |
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| T |
37584175 |
t |
37584175 |
T |
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