View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20625_low_19 (Length: 425)
Name: NF20625_low_19
Description: NF20625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20625_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 145; Significance: 4e-76; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 250 - 409
Target Start/End: Complemental strand, 965720 - 965556
Alignment:
| Q |
250 |
tatatatttcaagaccaactaagaatgttagaaatgatcctcgtcgatctgcatgttcttggaatgt-----caatatataaacaatcaagatgcttctt |
344 |
Q |
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| T |
965720 |
tatatatttcaagaccaactaagaatgttagaaatgatcctcgtcgatctgcatgttcttggaatgttatgtcaatatataaacaatcaagatgcttctt |
965621 |
T |
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| Q |
345 |
gtttaatgcacacacttgattcttatgtatatataggtgtctaatgcgagaaacaatgtcaccaa |
409 |
Q |
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| T |
965620 |
gtttaatgcacacacttgattcttatgtatatataggtgtctaatgcgagaaacaatgtcaccaa |
965556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 12 - 122
Target Start/End: Complemental strand, 965982 - 965872
Alignment:
| Q |
12 |
atgaaagccattaacaaaattaactcatttatttaaagactttgttaagctcgaacaaaacatgcttatcatttaatgcaagatggaaaagatttgtcca |
111 |
Q |
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| T |
965982 |
atgaaagccattaacaaaattaactcatttatttaaagactttgttaagctcgaacaaaacatgcttatcatttaatgcaagatggaaaagatttgtcca |
965883 |
T |
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| Q |
112 |
ccatactcaat |
122 |
Q |
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| T |
965882 |
ccatactcaat |
965872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 121 - 209
Target Start/End: Complemental strand, 965831 - 965743
Alignment:
| Q |
121 |
attgttggatgtgtccatttaaaacgtaattgaaatagttttgatgagagattcaaagcgatctgtgaaaaataatgattgagttaatg |
209 |
Q |
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| T |
965831 |
attgttggatgtgtccatttaaaaggtaattgaaatagttttgatgagagattcaaagtgatctgtgaaaaataatgattgagttaatg |
965743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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