View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20625_low_21 (Length: 412)
Name: NF20625_low_21
Description: NF20625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20625_low_21 |
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| [»] scaffold0286 (1 HSPs) |
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Alignment Details
Target: scaffold0286 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 7 - 395
Target Start/End: Original strand, 18769 - 19157
Alignment:
| Q |
7 |
gtgagatgaatataaaagtaattaaaattgtcgggacactgacg-taaggggtgaccatgatccaaatcaatcctactacccaaactaacacttgttccc |
105 |
Q |
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|||| ||||||||||||||||||||||||||||| ||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18769 |
gtgacatgaatataaaagtaattaaaattgtcggtacaatgacggtaaggggggaccatgatccaaatcaatcctactacccaaactaacacttgttccc |
18868 |
T |
|
| Q |
106 |
accagccaaaatactagcgtgaattaacatgcataggggtattttgataatttcacttgaaaacgagcaaaacctttttgataaagagcaagattcaatt |
205 |
Q |
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|||||| ||||||||||||| | ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
18869 |
accagctaaaatactagcgtaagttaacatgcgtaggggtattttgataatttcacttggaaacgagcaaaacctttttgataaagagcaggattcaatt |
18968 |
T |
|
| Q |
206 |
ataaatgattgggtcggggtggctcatttatgtagttggcccactcgtgctgggctgggtcagaccaacccatttgacacttctacatgcactcactatc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| || |
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| T |
18969 |
ataaatgattgggtcggggtggctcatttatgtagttggcccactcgtgctgggct-ggtcaggccaacccatttgacacttctacatgcactcactgtc |
19067 |
T |
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| Q |
306 |
aattagtttaaatatttatttattattatctttttagctatcaaggctgtgtttttgttcattaaacaatggtttgctgggttccttgat |
395 |
Q |
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| T |
19068 |
aattagtttaaatatttatttattattatctttttagctatcaaggctgtgtttttgttcattaaacaatggttcgctgggttccttgat |
19157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 7 - 395
Target Start/End: Complemental strand, 2163640 - 2163252
Alignment:
| Q |
7 |
gtgagatgaatataaaagtaattaaaattgtcgggacactgacg-taaggggtgaccatgatccaaatcaatcctactacccaaactaacacttgttccc |
105 |
Q |
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|||| ||||||||||||||||||||||||||||| ||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2163640 |
gtgacatgaatataaaagtaattaaaattgtcggtacaatgacggtaaggggggaccatgatccaaatcaatcctactacccaaactaacacttgttccc |
2163541 |
T |
|
| Q |
106 |
accagccaaaatactagcgtgaattaacatgcataggggtattttgataatttcacttgaaaacgagcaaaacctttttgataaagagcaagattcaatt |
205 |
Q |
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| T |
2163540 |
accagctaaaatactagcgtaagttaacatgcgtaggggtattttgataatttcacttggaaacgagcaaaacctttttgataaagagcaggattcaatt |
2163441 |
T |
|
| Q |
206 |
ataaatgattgggtcggggtggctcatttatgtagttggcccactcgtgctgggctgggtcagaccaacccatttgacacttctacatgcactcactatc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| || |
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| T |
2163440 |
ataaatgattgggtcggggtggctcatttatgtagttggcccactcgtgctgggct-ggtcaggccaacccatttgacacttctacatgcactcactgtc |
2163342 |
T |
|
| Q |
306 |
aattagtttaaatatttatttattattatctttttagctatcaaggctgtgtttttgttcattaaacaatggtttgctgggttccttgat |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2163341 |
aattagtttaaatatttatttattattatctttttagctatcaaggctgtgtttttgttcattaaacaatggttcgctgggttccttgat |
2163252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 7 - 395
Target Start/End: Complemental strand, 2175273 - 2174885
Alignment:
| Q |
7 |
gtgagatgaatataaaagtaattaaaattgtcgggacactgacg-taaggggtgaccatgatccaaatcaatcctactacccaaactaacacttgttccc |
105 |
Q |
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|||| ||||||||||||||||||||||||||||| ||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2175273 |
gtgacatgaatataaaagtaattaaaattgtcggtacaatgacggtaaggggggaccatgatccaaatcaatcctactacccaaactaacacttgttccc |
2175174 |
T |
|
| Q |
106 |
accagccaaaatactagcgtgaattaacatgcataggggtattttgataatttcacttgaaaacgagcaaaacctttttgataaagagcaagattcaatt |
205 |
Q |
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|||||| ||||||||||||| | ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
2175173 |
accagctaaaatactagcgtaagttaacatgcgtaggggtattttgataatttcacttggaaacgagcaaaacctttttgataaagagcaggattcaatt |
2175074 |
T |
|
| Q |
206 |
ataaatgattgggtcggggtggctcatttatgtagttggcccactcgtgctgggctgggtcagaccaacccatttgacacttctacatgcactcactatc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| || |
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| T |
2175073 |
ataaatgattgggtcggggtggctcatttatgtagttggcccactcgtgctgggct-ggtcaggccaacccatttgacacttctacatgcactcactgtc |
2174975 |
T |
|
| Q |
306 |
aattagtttaaatatttatttattattatctttttagctatcaaggctgtgtttttgttcattaaacaatggtttgctgggttccttgat |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2174974 |
aattagtttaaatatttatttattattatctttttagctatcaaggctgtgtttttgttcattaaacaatggttcgctgggttccttgat |
2174885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 1557669 - 1557615
Alignment:
| Q |
50 |
gtaaggggtgaccatgatccaaatcaatcctactacccaaactaacacttgttcc |
104 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
1557669 |
gtaaggggtgaccatgatccaactcaatcctactacccaacctaacacttgttcc |
1557615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 252
Target Start/End: Complemental strand, 33488622 - 33488570
Alignment:
| Q |
201 |
caattataaatgat-tgggtcggggtggctcatttatgtagttggcccactcg |
252 |
Q |
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||||||||||||| ||||||||| || ||||||||||||||||||||||||| |
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| T |
33488622 |
caattataaatgagatgggtcgggctgactcatttatgtagttggcccactcg |
33488570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 151
Target Start/End: Original strand, 27992299 - 27992332
Alignment:
| Q |
118 |
actagcgtgaattaacatgcataggggtattttg |
151 |
Q |
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|||||||||| ||||||||||||||||||||||| |
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| T |
27992299 |
actagcgtgagttaacatgcataggggtattttg |
27992332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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