View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20625_low_22 (Length: 381)
Name: NF20625_low_22
Description: NF20625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20625_low_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 16 - 371
Target Start/End: Complemental strand, 50087213 - 50086860
Alignment:
| Q |
16 |
gtatgaacttaactacattgaatcaaaaggtaggatgaagaaaggagacagggtatggcagatagcatttggcagtggatttaaatgcaatagtgctgtt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50087213 |
gtatgaacttaactacattgaatcaaaaggtaggatgaagaaaggagacagggtatggcagatagcatttggcagtggatttaaatgcaatagtgctgtt |
50087114 |
T |
|
| Q |
116 |
tggaaatgtaacagaagcattaagacacctattgatggaccttggacagattgcattgatcgttacccagttcatattcctgaaattgttaaactctagt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50087113 |
tggaaatgtaacagaagcattaagacacctattgatggaccttggacagattgcattgatcgttacccagttcatattcctgaaattgttaaactctagt |
50087014 |
T |
|
| Q |
216 |
ctactactctattgggagaaaagaaattcattcaaggtggt-nnnnnnntatttggtcaattactttgaatatttcagtcaaatactattttattgatac |
314 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50087013 |
c---tactctattgggagaaaagaaattcattcaaggtggtaaaaaaaatatttggtcaattactttgaatatttcagtcaaatactattttattgatac |
50086917 |
T |
|
| Q |
315 |
tgtaaaatagttcatgagtggtcatagttataccatttggccccttcactctctctg |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50086916 |
tgtaaaatagttcatgagtggtcatagttataccatttggccccttcactctctctg |
50086860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 23271474 - 23271277
Alignment:
| Q |
16 |
gtatgaacttaactacattgaatcaaaaggtaggatgaagaaaggagacagggtatggcagatagcatttggcagtggatttaaatgcaatagtgctgtt |
115 |
Q |
| |
|
||||||| | ||||| |||||||||||||| |||||||||| ||| || || |||||||| ||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
23271474 |
gtatgaattgaactatattgaatcaaaaggaaggatgaagagaggtgatagagtatggcaaatagcttttggaagtggatttaaatgcaatagtgctgtg |
23271375 |
T |
|
| Q |
116 |
tggaaatgtaacagaagcattaagacacctattgatggaccttggacagattgcattgatcgttacccagttcatattcctgaaattgttaaactcta |
213 |
Q |
| |
|
||||||||||| ||||||||||| |||||| || ||||||||||| ||||||||||||||| || ||||||||||||||||| |||||||| ||||| |
|
|
| T |
23271374 |
tggaaatgtaatagaagcattaaaacacctgttaatggaccttgggaagattgcattgatcgctatccagttcatattcctgagattgttaagctcta |
23271277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University