View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20625_low_25 (Length: 334)
Name: NF20625_low_25
Description: NF20625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20625_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 49059099 - 49058785
Alignment:
| Q |
1 |
aggatgaaagtgttggcaaaccctaattgctctatttcagtttccgttgcaacttgcaaccaacatgacatttttcagtatagagaagagactgtggcta |
100 |
Q |
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| T |
49059099 |
aggatgaaagtgttggcaaaccctaattgctctgtttcagtttccgttgcaacttgcaaccaacatgacatttttcagtatagagaagagaccgtggcta |
49059000 |
T |
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| Q |
101 |
gaactggtttggctactgctattttgaggatttttctggagaatcaacctgaggttttatcctcaaatgtgtttgttaatgatgggaagttgacaatgtc |
200 |
Q |
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| T |
49058999 |
gaactggtttgactactgctattttgaggatttttttggagaatcaacctgaggttttatcctcaaatgtgtttgttaatgatgggaagttgacaatgtc |
49058900 |
T |
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| Q |
201 |
ggtcaccgcattggttaaaaatgaaaaaggtgcaagtgttgagaagatcaagagtgaaataatgagtttatagagtgcatgatggagattaattaagaag |
300 |
Q |
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| T |
49058899 |
ggtcaccgcattggttaaaaatgaaaaaggtgcaagtgttgagaagatcaagagtgaaataattagtttatagagtgcatgatggagattaattaagaag |
49058800 |
T |
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| Q |
301 |
atcatagatacgaag |
315 |
Q |
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| T |
49058799 |
atcatagaaacgaag |
49058785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 232
Target Start/End: Original strand, 49059376 - 49059513
Alignment:
| Q |
95 |
tggctagaactggtttggctactgctattttgaggatttttctggagaatcaacctgaggttttatcctcaaatgtgtttgttaatgatgggaagttgac |
194 |
Q |
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| T |
49059376 |
tggctagacctggtttggctactgcgattttgaagatatttgtggacaatcaagctgagattttagtggcaaatgtctctgttaatgatggaaatttgat |
49059475 |
T |
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| Q |
195 |
aatgtcggtcaccgcattggttaaaaatgaaaaaggtg |
232 |
Q |
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| T |
49059476 |
cttggcaatcactgcattggttcaaaatgaaaatggtg |
49059513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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