View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20625_low_27 (Length: 313)
Name: NF20625_low_27
Description: NF20625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20625_low_27 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 302
Target Start/End: Original strand, 42730543 - 42730826
Alignment:
| Q |
19 |
gtttcttgtgtggaaatgataacagaaaaaatggttgtgatgatttgatgggaaaagtaggagctgaatctgttgttgaagctgtaaattgtgctgttaa |
118 |
Q |
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| T |
42730543 |
gtttcttgtgtggaaatgataacagaaaaaatggttgtgatgatttgatgggaaaagtaggagctgaatctgttgttgaagctgtaaattgtgctgttaa |
42730642 |
T |
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| Q |
119 |
tggaagatcttttgaggttgtgtattatccaagagctagtactcctgaattttgtgttaaggtttcttcagttaaatctgcaatgcaaattcaatggtgt |
218 |
Q |
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| T |
42730643 |
tggaagatcttttgaggttgtgtattatccaagagctagtactcctgaattttgtgttaaggtttcttcagttaaatctgcaatgcaaattcaatggtgt |
42730742 |
T |
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| Q |
219 |
tctggtatgagattcaaaatgccttttgaaactgaggattcttctaggattagttggtttatgggaactatttcttctgttcat |
302 |
Q |
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| T |
42730743 |
tctggtatgagattcaaaatgccttttgaaactgaggattcttctaggattagttggtttatgggaactatttcttctgttcat |
42730826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 285
Target Start/End: Original strand, 28347329 - 28347416
Alignment:
| Q |
198 |
gcaatgcaaattcaatggtgttctggtatgagattcaaaatgccttttgaaactgaggattcttctaggattagttggtttatgggaa |
285 |
Q |
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| T |
28347329 |
gcaatgcagattcgatggtgttctggaataagattcaagatggcctttgaaaccgaggattcgtctcgaataagttggtttatgggaa |
28347416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 129 - 301
Target Start/End: Complemental strand, 40352254 - 40352082
Alignment:
| Q |
129 |
tttgaggttgtgtattatccaagagctagtactcctgaattttgtgttaaggtttcttcagttaaatctgcaatgcaaattcaatggtgttctggtatga |
228 |
Q |
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| T |
40352254 |
tttgaggtagtttattatcctagagcaagtactcctgagttttgtattaagacttcagctgttaaagctgctatgagaattcaatggtgttctgggatga |
40352155 |
T |
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| Q |
229 |
gattcaaaatgccttttgaaactgaggattcttctaggattagttggtttatgggaactatttcttctgttca |
301 |
Q |
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| T |
40352154 |
ggtttaagatgccattcgaaaccgaagattcttctaggattagttggttcatgggaactatttcttctgttca |
40352082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 129 - 301
Target Start/End: Original strand, 21716183 - 21716355
Alignment:
| Q |
129 |
tttgaggttgtgtattatccaagagctagtactcctgaattttgtgttaaggtttcttcagttaaatctgcaatgcaaattcaatggtgttctggtatga |
228 |
Q |
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| T |
21716183 |
tttgaagttgtttactatccaagagctagcactcctgagttctgtgttaaggcttcagctgtgaaggctgctatgaggattcaatggtgttctgggatga |
21716282 |
T |
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| Q |
229 |
gattcaaaatgccttttgaaactgaggattcttctaggattagttggtttatgggaactatttcttctgttca |
301 |
Q |
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| T |
21716283 |
ggttcaagatgccctttgaaactgaagactcttctaggattagttggtttatgggaacaatcgcttctgttca |
21716355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 277
Target Start/End: Original strand, 51742176 - 51742244
Alignment:
| Q |
206 |
aattcaatggtgttctggtatgagattcaaaatgccttttgaaactgaggattcttctaggattagttggtt |
277 |
Q |
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| T |
51742176 |
aattcaatggtgttctggtgtgagttt-aagatgccatt--aaactgaggattcttctagtattagttggtt |
51742244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 298
Target Start/End: Original strand, 96356 - 96441
Alignment:
| Q |
213 |
tggtgttctggtatgagattcaaaatgccttttgaaactgaggattcttctaggattagttggtttatgggaactatttcttctgt |
298 |
Q |
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| T |
96356 |
tggtgtcctggaatgaggttcaagatgcccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgcttctgt |
96441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 301
Target Start/End: Original strand, 88348 - 88436
Alignment:
| Q |
213 |
tggtgttctggtatgagattcaaaatgccttttgaaactgaggattcttctaggattagttggtttatgggaactatttcttctgttca |
301 |
Q |
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| T |
88348 |
tggtgtcctggaatgaggttcaagatggccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgcttctgttca |
88436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 298
Target Start/End: Complemental strand, 40869926 - 40869841
Alignment:
| Q |
213 |
tggtgttctggtatgagattcaaaatgccttttgaaactgaggattcttctaggattagttggtttatgggaactatttcttctgt |
298 |
Q |
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| T |
40869926 |
tggtgtcctggaatgaggttcaagatgcccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgcttctgt |
40869841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 301
Target Start/End: Complemental strand, 40877935 - 40877847
Alignment:
| Q |
213 |
tggtgttctggtatgagattcaaaatgccttttgaaactgaggattcttctaggattagttggtttatgggaactatttcttctgttca |
301 |
Q |
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| T |
40877935 |
tggtgtcctggaatgaggttcaagatggccattgaaaccgaggactcatcaaggataagttggtttatcggaactgttgcttctgttca |
40877847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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