View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20625_low_28 (Length: 299)
Name: NF20625_low_28
Description: NF20625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20625_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 6900778 - 6900495
Alignment:
| Q |
1 |
tacctgatgtgcctctgtctgataagaaccctagcgtgatgaatggacttggccattccagatttgaacacgagagtctgaagacgacgttcaagaaaat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6900778 |
tacctgatgtgcctctgtctgataagaaccctagcgtgatgaatggacttggccattccagatttgaacacgagagtctgaagacgacgttcaagaaaat |
6900679 |
T |
|
| Q |
101 |
tctcaacagtgagagccaacacataatcgagcttgttctgtgtttcatcaagaagaccatgtttgaacattctcctcaaaagtgcttcaccctcaaagat |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6900678 |
tctcaacagtgagagccaacacataatcgagcttgttctgtgtttcatcaagaagaccatgtttgaacattctcctcaaaagtgcttcaccctcaaagat |
6900579 |
T |
|
| Q |
201 |
ccgacgaggattcttctcatccagtgtcaaaagtgtcctagcgttgttacggatacggctaagagcatattgaaccctccaaag |
284 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6900578 |
ccgacgaggattcttctcatccagtgtcaaaagcgtcctagcgttgttacggatacggctaagagcatattgaaccctccaaag |
6900495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 52 - 281
Target Start/End: Original strand, 44930699 - 44930929
Alignment:
| Q |
52 |
gccattccagatttgaacacga-gagtctgaagacgacgttcaagaaaattctcaacagtgagagccaacacataatcgagcttgttctgtgtttcatca |
150 |
Q |
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||||| |||||||| ||||| | ||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
44930699 |
gccatgccagatttaaacacaaagagtctgaagacgacactcgagaaaattctcaacagtgagagccaagacataatcgagcttgttctgagtttcatca |
44930798 |
T |
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| Q |
151 |
agaagaccatgtttgaacattctcctcaaaagtgcttcaccctcaaagatccgacgaggattcttctcatccagtgtcaaaagtgtcctagcgttgttac |
250 |
Q |
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|| | ||||| || ||||| ||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||||||| ||||| ||||||| |
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| T |
44930799 |
agcaagccatgcttaaacatcctcctcaaaagagcttcaccctcgaagatccgacgagggttcttttcatccagtgtcaaaagtgttctagcattgttac |
44930898 |
T |
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| Q |
251 |
ggatacggctaagagcatattgaaccctcca |
281 |
Q |
| |
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|||||||||||||||| |||||||||||||| |
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| T |
44930899 |
ggatacggctaagagcgtattgaaccctcca |
44930929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 44929830 - 44929873
Alignment:
| Q |
7 |
atgtgcctctgtctgataagaaccctagcgtgatgaatggactt |
50 |
Q |
| |
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||||||||||||| ||||||||||||||| || ||||||||||| |
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| T |
44929830 |
atgtgcctctgtcagataagaaccctagcatggtgaatggactt |
44929873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 201379 - 201096
Alignment:
| Q |
1 |
tacctgatgtgcctctgtctgataagaaccctagcgtgatgaatggacttggccattccagatttgaacacgagagtctgaagacgacgttcaagaaaat |
100 |
Q |
| |
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||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
201379 |
tacctgatgtgcctctgcctgataagaaccctagcatgatgaatagacttagccatgccagatttgaacacaagagtctgaagacgacgttcaagaaaat |
201280 |
T |
|
| Q |
101 |
tctcaacagtgagagccaacacataatcgagcttgttctgtgtttcatcaagaagaccatgtttgaacattctcctcaaaagtgcttcaccctcaaagat |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
201279 |
tctcaacagtgagagccaacacataatcgagcttgttctgtgtttcatcaagaagaccatgtttgaacattctcctcaaaagtgcttcaccttcaaagat |
201180 |
T |
|
| Q |
201 |
ccgacgaggattcttctcatccagtgtcaaaagtgtcctagcgttgttacggatacggctaagagcatattgaaccctccaaag |
284 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
201179 |
ccgacgagggttcttctcatccagtgtcaaaagtgtcctagcattgttacggatacggctaagagcatattgaaccctccaaag |
201096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 207865 - 208148
Alignment:
| Q |
1 |
tacctgatgtgcctctgtctgataagaaccctagcgtgatgaatggacttggccattccagatttgaacacgagagtctgaagacgacgttcaagaaaat |
100 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||| || ||||| ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
207865 |
tacctgatgtgcctctgcctgattagaaccctagcatggtgaatagacttagccatgccagatttgaacacaagagtctgaagacgacgttcaagaaaat |
207964 |
T |
|
| Q |
101 |
tctcaacagtgagagccaacacataatcgagcttgttctgtgtttcatcaagaagaccatgtttgaacattctcctcaaaagtgcttcaccctcaaagat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
207965 |
tctcaacagtgagagccaacacataatcgagcttgttctgtgtttcatcaagaagaccatgtttgaacattctcctcaaaagtgcttcaccttcaaagat |
208064 |
T |
|
| Q |
201 |
ccgacgaggattcttctcatccagtgtcaaaagtgtcctagcgttgttacggatacggctaagagcatattgaaccctccaaag |
284 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
208065 |
ccgacgagggttcttctcatccagtgtcaaaagtgtcctagcattgttacggatacggctaagagcatattgaaccctccaaag |
208148 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 3 - 284
Target Start/End: Complemental strand, 24652660 - 24652379
Alignment:
| Q |
3 |
cctgatgtgcctctgtctgataagaaccctagcgtgatgaatggacttggccattccagatttgaacacgagagtctgaagacgacgttcaagaaaattc |
102 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| |||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24652660 |
cctgatgtgcctctgcctgattagaaccctagcatgatgaatagacttagccatgccagatttgaacacaagagtctgaagacgacgttcaagaaaattc |
24652561 |
T |
|
| Q |
103 |
tcaacagtgagagccaacacataatcgagcttgttctgtgtttcatcaagaagaccatgtttgaacattctcctcaaaagtgcttcaccctcaaagatcc |
202 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24652560 |
tcaacagtgagagccaacacataatcaagcttgttttgtgtttcatcaagaagaccatgtttgaacattctcctcaaaagtgcttcaccctcaaagatcc |
24652461 |
T |
|
| Q |
203 |
gacgaggattcttctcatccagtgtcaaaagtgtcctagcgttgttacggatacggctaagagcatattgaaccctccaaag |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24652460 |
gacgaggattcttctcatccagtgtcaaaagtgtcctagaattgttacggatacggctaagagcatattgaaccctccaaag |
24652379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 29513963 - 29513680
Alignment:
| Q |
1 |
tacctgatgtgcctctgtctgataagaaccctagcgtgatgaatggacttggccattccagatttgaacacgagagtctgaagacgacgttcaagaaaat |
100 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| | || ||||||||||| ||||||||||||| |
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|
| T |
29513963 |
tacctgatgtgtctctgcctgataagaaccctagcatgatgaatggacttggccataccagatttgaatgcaagtgtctgaagacggcgttcaagaaaat |
29513864 |
T |
|
| Q |
101 |
tctcaacagtgagagccaacacataatcgagcttgttctgtgtttcatcaagaagaccatgtttgaacattctcctcaaaagtgcttcaccctcaaagat |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| || ||||| || ||||| || ||||||||||||||||| |
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|
| T |
29513863 |
tctcaacagtgagagccaagacataatcgagtttgttctgagtttcatcaagaagaccatgcttaaacatccttctcaacagcgcttcaccctcaaagat |
29513764 |
T |
|
| Q |
201 |
ccgacgaggattcttctcatccagtgtcaaaagtgtcctagcgttgttacggatacggctaagagcatattgaaccctccaaag |
284 |
Q |
| |
|
|||||||||||||||||||||| ||||| || |||| || ||||||||||||||||| | ||| || |||||||||||||| |
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|
| T |
29513763 |
acgacgaggattcttctcatccaaggtcaacagattccttgcattgttacggatacggctcaaagcgtactgaaccctccaaag |
29513680 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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