View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20625_low_30 (Length: 296)

Name: NF20625_low_30
Description: NF20625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20625_low_30
NF20625_low_30
[»] chr7 (2 HSPs)
chr7 (84-201)||(3738487-3738604)
chr7 (93-201)||(27819168-27819278)
[»] chr3 (2 HSPs)
chr3 (78-201)||(40935242-40935365)
chr3 (145-183)||(45951687-45951725)
[»] chr8 (2 HSPs)
chr8 (78-183)||(44508775-44508881)
chr8 (78-178)||(44508634-44508735)
[»] chr1 (4 HSPs)
chr1 (123-175)||(26923025-26923077)
chr1 (229-281)||(33076057-33076109)
chr1 (145-201)||(45817289-45817345)
chr1 (143-196)||(45817947-45818000)
[»] chr4 (3 HSPs)
chr4 (145-196)||(19330217-19330268)
chr4 (152-196)||(6114996-6115040)
chr4 (152-196)||(6115057-6115101)
[»] chr5 (1 HSPs)
chr5 (153-200)||(17219038-17219085)
[»] chr6 (1 HSPs)
chr6 (153-201)||(29200702-29200750)


Alignment Details
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 84 - 201
Target Start/End: Complemental strand, 3738604 - 3738487
Alignment:
Q  84 gtgtgaggtggtgtgtttaattggagtttatatcggagcccttgatttttgatccaacagctgataactattcctaccattctcacatataaaaggcatt 183  Q
    |||||||||||||||||||||  | ||| |||| |||||||||||||||||||| |||  ||||||||||||||||| ||||||||||||||||||||||    
T  3738604 gtgtgaggtggtgtgtttaatctgtgttaatattggagcccttgatttttgatctaacgactgataactattcctactattctcacatataaaaggcatt 3738505  T
Q  184 ctcacttgatatgtcccc 201  Q
    ||||||||||||| ||||    
T  3738504 ctcacttgatatgccccc 3738487  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 201
Target Start/End: Original strand, 27819168 - 27819278
Alignment:
Q  93 ggtgtgtttaattggagtttatatcgga--gcccttgatttttgatccaacagctgataactattcctaccattctcacatataaaaggcattctcactt 190  Q
    ||||| ||||||||| |||||||||  |  ||| ||||||||||||| ||   |  |||||||||||||| ||||||||||||||||  |||||||||||    
T  27819168 ggtgtatttaattggtgtttatatcacacagcctttgatttttgatctaatgacgaataactattcctactattctcacatataaaaaacattctcactt 27819267  T
Q  191 gatatgtcccc 201  Q
    |||||| ||||    
T  27819268 gatatgccccc 27819278  T

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Target: chr3 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 78 - 201
Target Start/End: Complemental strand, 40935365 - 40935242
Alignment:
Q  78 atgattgtgtgaggtggtgtgtttaattggagtttatatcggagcccttgatttttgatccaacagctgataactattcctaccattctcacatataaaa 177  Q
    ||||| ||||||||||||| |||||||||||||||||||  |||| ||| |||||||||||||| || ||||||||||||||||||||||| | ||||||    
T  40935365 atgatagtgtgaggtggtgggtttaattggagtttatattagagcacttaatttttgatccaacggccgataactattcctaccattctcataaataaaa 40935266  T
Q  178 ggcattctcacttgatatgtcccc 201  Q
     |||||||||| | ||||||||||    
T  40935265 tgcattctcacataatatgtcccc 40935242  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 183
Target Start/End: Original strand, 45951687 - 45951725
Alignment:
Q  145 tgataactattcctaccattctcacatataaaaggcatt 183  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  45951687 tgataaatattcctgccattctcacatataaaaggcatt 45951725  T

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Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 78 - 183
Target Start/End: Original strand, 44508775 - 44508881
Alignment:
Q  78 atgattgtgtgaggtggtgtgtttaattggagttt-atatcggagcccttgatttttgatccaacagctgataactattcctaccattctcacatataaa 176  Q
    ||||| |||||||||||||||||||| ||  |||| |||| |||| ||||||||||||||| ||| |  |||||||| |||||||||| |||||||||||    
T  44508775 atgatagtgtgaggtggtgtgtttaaatgatgttttatattggagtccttgatttttgatctaacggtcgataactaatcctaccattttcacatataaa 44508874  T
Q  177 aggcatt 183  Q
    || ||||    
T  44508875 agacatt 44508881  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 78 - 178
Target Start/End: Original strand, 44508634 - 44508735
Alignment:
Q  78 atgattgtgtgaggtggtgtgtttaattggagttt-atatcggagcccttgatttttgatccaacagctgataactattcctaccattctcacatataaa 176  Q
    ||||| |||||| ||||||||||||| ||  |||| |||| |||| ||||||||||||||| ||| |  |||||||| |||||||||| |||||||||||    
T  44508634 atgatagtgtgatgtggtgtgtttaaatgatgttttatattggagtccttgatttttgatctaacggtcgataactaatcctaccattttcacatataaa 44508733  T
Q  177 ag 178  Q
    ||    
T  44508734 ag 44508735  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 26923077 - 26923025
Alignment:
Q  123 ccttgatttttgatccaacagctgataactattcctaccattctcacatataa 175  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  26923077 ccttgatttttgatctaacagctgatgactattcctaccattctcacatataa 26923025  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 33076109 - 33076057
Alignment:
Q  229 taagtcctgaaatcttaaagttcttcgcttggccaaaagatttttaccctatg 281  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  33076109 taagtgctgaaatcttaaagttcttcgcttggccaaaagttttttaccctatg 33076057  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 45817345 - 45817289
Alignment:
Q  145 tgataactattcctaccattctcacatataaaaggcattctcacttgatatgtcccc 201  Q
    |||||| | ||||||||||||||||||||||||  ||||||||| ||||||||||||    
T  45817345 tgataattgttcctaccattctcacatataaaaatcattctcacatgatatgtcccc 45817289  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 45817947 - 45818000
Alignment:
Q  143 gctgataactattcctaccattctcacatataaaaggcattctcacttgatatg 196  Q
    |||||||| ||||| || |||||||||||||||||| ||||||||| |||||||    
T  45817947 gctgataattattcttaacattctcacatataaaagtcattctcacatgatatg 45818000  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 196
Target Start/End: Original strand, 19330217 - 19330268
Alignment:
Q  145 tgataactattcctaccattctcacatataaaaggcattctcacttgatatg 196  Q
    |||||| | ||||||||||||||||||||||||| ||||||||| |||||||    
T  19330217 tgataattgttcctaccattctcacatataaaagtcattctcacatgatatg 19330268  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 6114996 - 6115040
Alignment:
Q  152 tattcctaccattctcacatataaaaggcattctcacttgatatg 196  Q
    ||||||||||||||||||||||||| |  ||||||||||||||||    
T  6114996 tattcctaccattctcacatataaatgttattctcacttgatatg 6115040  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 6115101 - 6115057
Alignment:
Q  152 tattcctaccattctcacatataaaaggcattctcacttgatatg 196  Q
    ||||||||||||||| ||||||||| |  ||||||||||||||||    
T  6115101 tattcctaccattcttacatataaatgttattctcacttgatatg 6115057  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 200
Target Start/End: Complemental strand, 17219085 - 17219038
Alignment:
Q  153 attcctaccattctcacatataaaaggcattctcacttgatatgtccc 200  Q
    |||||||||||||||||||| || |  |||||||||||||||||||||    
T  17219085 attcctaccattctcacataaaatactcattctcacttgatatgtccc 17219038  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 29200750 - 29200702
Alignment:
Q  153 attcctaccattctcacatataaaaggcattctcacttgatatgtcccc 201  Q
    |||||||||||||||||||| || |  ||||||||||||||||| ||||    
T  29200750 attcctaccattctcacataaaatactcattctcacttgatatgccccc 29200702  T

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