View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20625_low_32 (Length: 287)

Name: NF20625_low_32
Description: NF20625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20625_low_32
NF20625_low_32
[»] chr3 (1 HSPs)
chr3 (7-287)||(55303639-55303919)


Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 7 - 287
Target Start/End: Complemental strand, 55303919 - 55303639
Alignment:
Q  7 tccaataaaattcatataatatgcaagatgttgatgcaaaagtgcaattactagatgacgagattataagtgattaggataacaacagaaatagaattga 106  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55303919 tccaataaatttcatataatacgcaagatgttgatgcaaaagtgcaattactagatgacgagattataagtgattaggataacaacagaaatagaattga 55303820  T
Q  107 gtctgaaattgtatgattagaggaaaggtaagtaatagcaaatgctgagtgacctgttgggttgatggtgatgagaggcggaccgtggtgcaatatgatt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55303819 gtctgaaattgtatgattagaggaaaggtaagtaatagcaaatgctgagtgacctgttgggttgatggtgatgagaggcggaccgtggtgcaatatgatt 55303720  T
Q  207 ggattggttgtagccttgattcatcagagcaacaaaagaacagcttattacaccctttatacttttctaccagccacttta 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55303719 ggattggttgtagccttgattcatcagagcaacaaaagaacagcttattacaccctttatacttttctaccagccacttta 55303639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University