View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20625_low_33 (Length: 279)
Name: NF20625_low_33
Description: NF20625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20625_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 7 - 263
Target Start/End: Original strand, 9220309 - 9220565
Alignment:
| Q |
7 |
tatattattctcaataatttctataacagagaatatgtatgggtttttggccaactaatctagtttttattttagatgcttgccttgcatgttgtgtttt |
106 |
Q |
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| T |
9220309 |
tatataattctcaataatttctataacagagaatatgtatgggtttttggccaactaatctagtttttattttagatgcttgccttgcatgttgtgtttt |
9220408 |
T |
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| Q |
107 |
aatttaatgcttgccttgccttgcatcttgtattttagacgaagaaattttgttccagtactgtttagggacaaagctagtaacaatgagagtaacaaag |
206 |
Q |
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| T |
9220409 |
aatttaatgcttgccttgccttgcatgttgtattttagacgaagaaattttgttccagtactgtttagggacaaagctagtaacaatgagagtaacaaag |
9220508 |
T |
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| Q |
207 |
tgactgatattgtctcactgatttnnnnnnngagtacaaacaggaacattgtagttg |
263 |
Q |
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| T |
9220509 |
tgactgatattgtctcactgatttaaaaaaagagtacaaacaggaacattgtagttg |
9220565 |
T |
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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 219
Target Start/End: Complemental strand, 6572969 - 6572894
Alignment:
| Q |
144 |
gacgaagaaattttgttccagtactgtttagggacaaagctagtaacaatgagagtaacaaagtgactgatattgt |
219 |
Q |
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| T |
6572969 |
gacgaagatatttttttcaagtactgtttagggacaaagctagtaaaagcgagagtaacaaagtgacggatattgt |
6572894 |
T |
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