View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20625_low_34 (Length: 273)
Name: NF20625_low_34
Description: NF20625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20625_low_34 |
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| [»] scaffold0090 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 14 - 263
Target Start/End: Complemental strand, 1107870 - 1107616
Alignment:
| Q |
14 |
cagtaatatgccaaagctaaatacatcggattttatggagaataacccatcaatggcatactcaggagccatataaccactg--aaaaaaccacaaatga |
111 |
Q |
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| T |
1107870 |
cagtaatatgccaaagctaaatacatcggattttatggagaataacccatcaatggcatactcgggagccatataaccactggaaaaaaattacaaatga |
1107771 |
T |
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| Q |
112 |
gtaaatttaaattgaaaatat---tgtaaatgacttaaagatgttaatgaaaatacttactgcgtcccaactactctgtttgtattcccctcaacttgat |
208 |
Q |
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| T |
1107770 |
gttaatttgaattaaaaaaaaaaatctaaatgacttaaagatatcaatgaaagtacttactgtgtcccaactactctgtttgtattcccctcaacttgat |
1107671 |
T |
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| Q |
209 |
catcaccacaaatttttgccaagccaaaatctgatattttcgggttcatctcatt |
263 |
Q |
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| T |
1107670 |
catcaccacaaatttttgccaagccaaaatctgatattttcgggttcatatcatt |
1107616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 17 - 264
Target Start/End: Complemental strand, 1077631 - 1077384
Alignment:
| Q |
17 |
taatatgccaaagctaaatacatcggattttatggagaataacccatcaatggcatactcaggagccatataaccactgaaaaaaccacaaatgagtaaa |
116 |
Q |
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||||| |||||||||||||||||| |||||| ||||||||| |||||||||||||| || |||||||||||||||||||||| |||||||||| || |
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| T |
1077631 |
taatacgccaaagctaaatacatcagattttgtggagaatagtccatcaatggcatattctggagccatataaccactgaaaagtttacaaatgagttaa |
1077532 |
T |
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| Q |
117 |
tttaaattgaaaatattgtaaatgacttaaagatgttaatgaaaatacttactgcgtcccaactactctgtttgtattcccctcaacttgatcatcacca |
216 |
Q |
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| T |
1077531 |
tttgaattattttttctttcaataacttaaaaatatcaatgaaactacttactgtgttccaactactctgtttgtattcccctcaacttgatcatcccca |
1077432 |
T |
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| Q |
217 |
caaatttttgccaagccaaaatctgatattttcgggttcatctcattg |
264 |
Q |
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| T |
1077431 |
caaatttttgccaagccaaaatctgatatttttggattcatatcattg |
1077384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 1050729 - 1050497
Alignment:
| Q |
17 |
taatatgccaaagctaaatacatcggattttatggagaataacccatcaatggcatactcaggagccatataaccactgaaaaaaccacaaatgagtaaa |
116 |
Q |
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||||| |||||||||||||||||| |||||| ||||||| | ||||||||||||||| || |||||||||||||||||||||| | |||||||| || |
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| T |
1050729 |
taatacgccaaagctaaatacatcagattttgtggagaaaagcccatcaatggcatattctggagccatataaccactgaaaagtgtataaatgagttaa |
1050630 |
T |
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| Q |
117 |
tttaaattgaaaatat-tgtaaatgacttaaagatgttaatgaaaatacttactgcgtcccaactactctgtttgtattcccctcaacttgatcatcacc |
215 |
Q |
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| T |
1050629 |
tttgaattatttttttctctcagtaacttaaaattatgaatgaaactacttactgtgttccaaccactctttttgtattcccttcaacttgatcatcccc |
1050530 |
T |
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| Q |
216 |
acaaatttttgccaagccaaaatctgatatttt |
248 |
Q |
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| T |
1050529 |
acaaatttttgccaagccaaaatctgatatttt |
1050497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 154 - 248
Target Start/End: Complemental strand, 1091334 - 1091240
Alignment:
| Q |
154 |
aatgaaaatacttactgcgtcccaactactctgtttgtattcccctcaacttgatcatcaccacaaatttttgccaagccaaaatctgatatttt |
248 |
Q |
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| T |
1091334 |
aatgaaactacttactgtgttccaactactctttttgtattcccctcaacttgatcatccccacaaatttttgccaagccaaaatctgatatttt |
1091240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 99
Target Start/End: Complemental strand, 1091503 - 1091428
Alignment:
| Q |
24 |
ccaaagctaaatacatcggattttatggagaataacccatcaatggcatactcaggagccatataaccactgaaaa |
99 |
Q |
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| T |
1091503 |
ccaaagctaaatacatcagattttgtagaaaatagtccatcaatggcgtattctggagccatataaccactgaaaa |
1091428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 23555929 - 23555847
Alignment:
| Q |
17 |
taatatgccaaagctaaatacatcggattttatggagaataacccatcaatggcatactcaggagccatataaccactgaaaa |
99 |
Q |
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| T |
23555929 |
taatacgccaaaactaaatacatctgatttaatagagaataatccatcgatggcatattcaggtgccatataaccactgaaaa |
23555847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 23361508 - 23361434
Alignment:
| Q |
24 |
ccaaagctaaatacatcggattttatggagaataacccatcaatggcatactcaggagccatataaccactgaaa |
98 |
Q |
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| T |
23361508 |
ccaaagctatatacatcagatttgatggagaatatcccatcgatcgcatattcaggtgccatataaccactgaaa |
23361434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0090 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 8079 - 8160
Alignment:
| Q |
17 |
taatatgccaaagctaaatacatcggattttatggagaataacccatcaatggcatactcaggagccatataaccactgaaa |
98 |
Q |
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||||| |||||||||||||||||| ||||| || || ||||| |||||| ||||||| ||||| |||||||| || |||||| |
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| T |
8079 |
taatacgccaaagctaaatacatctgatttgatagaaaataatccatcagtggcatattcaggtgccatatagccgctgaaa |
8160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0090; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 262
Target Start/End: Original strand, 8225 - 8326
Alignment:
| Q |
161 |
atacttactgcgtcccaactactctgtttgtattcccctcaacttgatcatcaccacaaatttttgccaagccaaaatctgatattttcgggttcatctc |
260 |
Q |
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| T |
8225 |
atacttactatgtgccaacgattctgtttgttctcccctcaatttgatcacctccacacattctagccatgccaaaatctgaaattttgggattcatatc |
8324 |
T |
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| Q |
261 |
at |
262 |
Q |
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|| |
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| T |
8325 |
at |
8326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 22689140 - 22689218
Alignment:
| Q |
23 |
gccaaagctaaatacatcggattttatggagaataacccatcaatggcatactcaggagccatataaccactgaaaaaa |
101 |
Q |
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| T |
22689140 |
gccaaagctaaatacatctgattttatagagaataatctatgaataacatattcaggtgccatgtaaccactggaaaaa |
22689218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 99
Target Start/End: Complemental strand, 28433438 - 28433363
Alignment:
| Q |
24 |
ccaaagctaaatacatcggattttatggagaataacccatcaatggcatactcaggagccatataaccactgaaaa |
99 |
Q |
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||||||||||||||||| ||||||| |||||||| |||| ||| |||| || || ||||||||||| ||||||| |
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| T |
28433438 |
ccaaagctaaatacatctgattttacagagaataatccatgaatcacatattctggtgccatataaccgctgaaaa |
28433363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 101
Target Start/End: Original strand, 40125826 - 40125858
Alignment:
| Q |
69 |
gcatactcaggagccatataaccactgaaaaaa |
101 |
Q |
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| T |
40125826 |
gcatactcaggagccatataaccactgcaaaaa |
40125858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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