View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20625_low_36 (Length: 260)
Name: NF20625_low_36
Description: NF20625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20625_low_36 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 10481177 - 10481435
Alignment:
| Q |
1 |
catagtttaatagcttattagttttcccacaatgatgacaaagtactttgttagctctcaagaacatatgaatcagagaattgtacgttaattaacacaa |
100 |
Q |
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| T |
10481177 |
catagtttaatagcttattagttttcccacaatgatgacaaagtactttgttagctctcaagaacatatgaatcagagaattgtacgttaattaacacaa |
10481276 |
T |
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| Q |
101 |
tggttttacttatgtgataaaatgacttgaatttaggtacaagatgttacttgcttaaaataaaaagcatttgctccaacatataggtcccttcaattaa |
200 |
Q |
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| T |
10481277 |
tggttt-acttatgtgataaaatgacttgaatttaggtacaagatgttacttgcttaagataaaaagcatttgctccaacatataggtcccttcaattaa |
10481375 |
T |
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| Q |
201 |
tttatgtgagtggcttatgagtcatccaatttacaatactaatgaccataaaatattaat |
260 |
Q |
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| T |
10481376 |
tttatgtgagtggcttatgagtcatccaatttacaatactaatgaccataaaatattaat |
10481435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 106 - 256
Target Start/End: Complemental strand, 4953708 - 4953560
Alignment:
| Q |
106 |
ttacttatgtgataaaatgacttgaatttaggtacaagatgttacttgcttaaaataaaaagcatttgctccaacatataggtcccttcaattaatttat |
205 |
Q |
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| T |
4953708 |
ttacttatgtgatagaatgactagaatttaggtacaagatgttacttgcttaaattaaaaagcatttgctccaac--ataggtttcttcaaataatttat |
4953611 |
T |
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| Q |
206 |
gtgagtggcttatgagtcatccaatttacaatactaatgaccataaaatat |
256 |
Q |
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| T |
4953610 |
gttaatggcttatgagtcatctaatttacaatactaatgaccatacaatat |
4953560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 4953761 - 4953718
Alignment:
| Q |
10 |
atagcttattagttttcccacaatgatgacaaagtactttgtta |
53 |
Q |
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| T |
4953761 |
atagcttattagttttcccacaatcatgacaaagtgctttgtta |
4953718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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