View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20625_low_39 (Length: 248)
Name: NF20625_low_39
Description: NF20625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20625_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 11 - 233
Target Start/End: Original strand, 9911304 - 9911522
Alignment:
| Q |
11 |
atcatcatcattgaggttgttgataaatgcaatgaagagagtcgaaattaaatatcattagtggtgaagatttaatt-tgggccatgggtaggttagggt |
109 |
Q |
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| T |
9911304 |
atcataatcattgaggttgttgataaatgcaatgaagagagtcgaaag-----atcattagtggtaaagatttaaatctgggccatgggtaggttagggt |
9911398 |
T |
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| Q |
110 |
ttgaggactatgttggtcctctatctcttctcctccaaaactatcgcaaccgtggtagtggctcgagcagtggtaatggctaacattgatatggatatgg |
209 |
Q |
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| T |
9911399 |
ttgaggactatgttggtcctctatctcttctcctccaaaactatcgcaacggtgctagtggctcgagcagtggcaatggccaacattgatatggatatgg |
9911498 |
T |
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| Q |
210 |
ttaaaataagttgtgcttaaaact |
233 |
Q |
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|||||||||||||||||||||||| |
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| T |
9911499 |
ttaaaataagttgtgcttaaaact |
9911522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 5 - 160
Target Start/End: Original strand, 9921375 - 9921525
Alignment:
| Q |
5 |
atggacatcatcatcattgaggttgttgataaatgcaatgaagagagtcgaaattaaatatcattagtggtgaagatttaatttgggccatgggtaggtt |
104 |
Q |
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| T |
9921375 |
atgggcatcatcaccactgaggctgttgagaaatgcaatgaagagagtcgaaag-----atcattagcggtgaagatataatacgggccatgggtaggtt |
9921469 |
T |
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| Q |
105 |
agggtttgaggactatgttggtcctctatctcttctcctccaaaactatcgcaacc |
160 |
Q |
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| T |
9921470 |
agggtttgaggactatgttggtcctctatctcttctcctccaaaactatcgcaacc |
9921525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 233
Target Start/End: Original strand, 9921695 - 9921729
Alignment:
| Q |
199 |
tatggatatggttaaaataagttgtgcttaaaact |
233 |
Q |
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| T |
9921695 |
tatggatatggttaaattaagttgtgcttaaaact |
9921729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 132
Target Start/End: Complemental strand, 9634572 - 9634519
Alignment:
| Q |
79 |
gatttaatttgggccatgggtaggttagggtttgaggactatgttggtcctcta |
132 |
Q |
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| T |
9634572 |
gatttaatatgggcaatggataggttaggctttgatgactatgttggccctcta |
9634519 |
T |
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