View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20625_low_43 (Length: 232)
Name: NF20625_low_43
Description: NF20625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20625_low_43 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 31284589 - 31284790
Alignment:
| Q |
14 |
attattctgcccatttctaaaactgataaaacattgacaatttcttccgacttgacaagtcggaagacttcagttggttgtttcctaacaagttggagat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31284589 |
attattctgcccatttctaaaactgataaaacattgacaatttcttccgacttgacaagtcggaagacttcagttggttgtttcctaacaagttggagat |
31284688 |
T |
|
| Q |
114 |
cattctgcagctgaactaaattgttagcatgaagcgacatccttagcaagaaataccactggaaccaaactaggagtgaaacatctctttgttagttagt |
213 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31284689 |
cattctgcagctgaactaaatcgttagcatgaagcgacatccttagcaagaaataccactggaaccaaactaggagtgaaacatctctttgttagttagt |
31284788 |
T |
|
| Q |
214 |
tc |
215 |
Q |
| |
|
|| |
|
|
| T |
31284789 |
tc |
31284790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University