View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20625_low_46 (Length: 230)
Name: NF20625_low_46
Description: NF20625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20625_low_46 |
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Alignment Details
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 37304942 - 37304999
Alignment:
| Q |
162 |
cttacgcttccatttcttggatctgatgctgtgtatgacggtgataacgtttcttctt |
219 |
Q |
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| T |
37304942 |
cttacgcttccatttcttggatctgatgctgtgtatgacggtgataacgtttcttctt |
37304999 |
T |
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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 37304781 - 37304826
Alignment:
| Q |
1 |
tctgcttagttccttcctttgcttgtcatcagggtgtggacattcc |
46 |
Q |
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| T |
37304781 |
tctgcttagttccttcctttgcttgtcatcagggtgtggacattcc |
37304826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 16825205 - 16825164
Alignment:
| Q |
1 |
tctgcttagttccttcctttgcttgtcatcagggtgtggaca |
42 |
Q |
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| T |
16825205 |
tctgcttaactccttcctttgcttgtcatctgggtgtggaca |
16825164 |
T |
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