View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20625_low_47 (Length: 217)
Name: NF20625_low_47
Description: NF20625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20625_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 24 - 199
Target Start/End: Original strand, 5704157 - 5704332
Alignment:
| Q |
24 |
taaacataaacattatgaaggtgcatcaattcacacgtggattttgggagcatgaaccttccctcacacttggttgcaagcgtttacgtcctcttgcacc |
123 |
Q |
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| T |
5704157 |
taaacataaacattatgaaggtgcatcaattcacacgtggattttgggagcatgaaccttccctcacacttggttgcaagcgtttacgtcctcttgcacc |
5704256 |
T |
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| Q |
124 |
taaaatttcttctaataacaccgataattctactactaacaccccttctctttcttttgatctcaagagtttcatt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5704257 |
taaaatttcttctaataacaccgataattctactactaacaccccttctctttcttttgatctcaagagtttcatt |
5704332 |
T |
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