View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20625_low_6 (Length: 560)
Name: NF20625_low_6
Description: NF20625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20625_low_6 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 14 - 560
Target Start/End: Original strand, 42558823 - 42559369
Alignment:
| Q |
14 |
ggtgtcagtttgattgagttgcattctaaccacttgtgaaaacctagcattttttgtatcattaaatttcaaattagtaaacctaaaagaattaacagag |
113 |
Q |
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| T |
42558823 |
ggtgtcagtttgattgagttgcattctaaccacttgtgaaaacctagcattttttgtatcattaaatttcaaattagtaaacctaaaagaattaacagag |
42558922 |
T |
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| Q |
114 |
taactaagcacgtctaaaccacgcgcccaaatatgtttcttccctttacgaccaggaacaagatcctcaatcgccaaaggaacaacatcctcaacaaaaa |
213 |
Q |
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| T |
42558923 |
taactaagcacgtctaaaccacgcgcccaaatatgtttcttccctttacgaccaggaacaagatcctcaatcgccaaaggaacaacatcctcaacaacaa |
42559022 |
T |
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| Q |
214 |
caacattctcctctttttcctcatctttcatcaacacaagcaactccctcaaaagtgaaaccgcagttgttctatcacatgctgcaacatgaagtctcat |
313 |
Q |
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| T |
42559023 |
caacattctcctctttttcctcatctttcatcaacacaagcaactccctcaaaagtgaaaccgcagttgttctatcacatgctgcaacatgaagtctcat |
42559122 |
T |
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| Q |
314 |
aaccaccacccatgttttttcatcaggcatagcataaatgctagcaacaaacatgtcagtatcaataccggtacgatcttgccatgtgttacggttcagt |
413 |
Q |
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| T |
42559123 |
aaccaccacccatgttttttcatcaggcatagcataaatgctagcaacaaacatgtcagtatcaataccggtacgatcttgccatgtgttacggttcagt |
42559222 |
T |
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| Q |
414 |
tcatgttccatgatttgttgcaacggtgaaatagaaacagtgtcgnnnnnnnnnnnngcaagaatgttggaagggacattgatgttgtgagactcgattt |
513 |
Q |
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| T |
42559223 |
tcatgttccatgatttgttgcaacggtgaaatagaaacagtgtcgtttttgttttttgcaagaatgttggaagtgacattgatgttgtgagactcgattt |
42559322 |
T |
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| Q |
514 |
tgatgaaaggagtgtgagatgtaagaaaggagaaagtagtgtctgtg |
560 |
Q |
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| T |
42559323 |
tgatgaaaggagtgtgagatgtaagaaaggagaaagtagtgtctgtg |
42559369 |
T |
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