View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20625_low_7 (Length: 515)
Name: NF20625_low_7
Description: NF20625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20625_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 10 - 496
Target Start/End: Original strand, 44786003 - 44786496
Alignment:
| Q |
10 |
ataattctcaagggagttaaaatcttaataggataatgtgtcatgcatcaaacttgacacacactatgctattttgcgacatttgcaaaatctat-ttca |
108 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
44786003 |
ataattcttaagggagttaaaatcttaataggataatgtgtcatgtatcaaacttgacacacactgtgctattttgcgacatttgcaaaatctatgttca |
44786102 |
T |
|
| Q |
109 |
acttnnnnnnnnnttagttaacactattgcactgaaacttgttg----------gtagcttaggcatcacctctttgcaaaaatggaacacagaagtttg |
198 |
Q |
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|||| ||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44786103 |
acttaaaaaaaa-ttagttaacactattgcactgaaacttgtagcccgttgtaggtagcttagacatcacctctttgcaaaaatggaacacagaagtttg |
44786201 |
T |
|
| Q |
199 |
gtgtcatacttctttctcattgccattggaatttgaaccaaaatcattggataaatgcacacagatccttcaacatcatcaaccttgtttggtgatatac |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44786202 |
gtgtcatacttctttctcattgccattggaatttgaaccaaaatcattggataaacgcacacagatccttcaacatcatcaaccttgtttggtgacatac |
44786301 |
T |
|
| Q |
299 |
ctctttctcattgcacattggaatttgactcaaaatcattgtataaatgcacacagatccattaacatcatcaaccttgaatggttgcccgttaatcctt |
398 |
Q |
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|| ||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
44786302 |
ctttttctcattgcacattggaatttcactcaaaatcattggataaatgcacaaagatccattaacatcatcaaccttgaatggttccccgttaatcctt |
44786401 |
T |
|
| Q |
399 |
ggcttaacttactggaatttgatccaaaagcaccccaaacaaagaagcatacagtccacgaattcgatgagaaacaaaataacataaaatttcgaaag |
496 |
Q |
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| T |
44786402 |
ggcttaacttactggaatttgatccaaaagcaccccaaacaaagaagcatacagtccacggattcgatgagaaacaa---aacataaaatttcgaaag |
44786496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 200 - 496
Target Start/End: Original strand, 28334222 - 28334518
Alignment:
| Q |
200 |
tgtcatacttctttctcattgccattggaatttgaaccaaaatcattggataaatgcacacagatccttcaacatcatcaaccttgtttggtgatatacc |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28334222 |
tgtcatacttctttctcattgccattggaatttgaaccaaaatcattggataaatgcacacagatccttcaacatcatcaaccttgtttggtgatatacc |
28334321 |
T |
|
| Q |
300 |
tctttctcattgcacattggaatttgactcaaaatcattgtataaatgcacacagatccattaacatcatcaaccttgaatggttgcccgttaatccttg |
399 |
Q |
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| ||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
28334322 |
tttttctcattgcacattggaattttactcaaaatcattggataaatgcacatagatccattaacatcatcaaccttgaatggttccccgttaatccttg |
28334421 |
T |
|
| Q |
400 |
gcttaacttactggaatttgatccaaaagcaccccaaacaaagaagcatacagtccacgaattcgatgagaaacaaaataacataaaatttcgaaag |
496 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
28334422 |
gcttaacttactggaatttgatccaaaagcaccccaaacaaagaagcatacagtccacgaattcgatgagaaacaaaacaacataaaatttcgaaag |
28334518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 10 - 314
Target Start/End: Original strand, 28333917 - 28334221
Alignment:
| Q |
10 |
ataattctcaagggagttaaaatcttaataggataatgtgtcatgcatcaaacttgacacacactatgctattttgcgacatttgcaaaatctat-ttca |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28333917 |
ataattctcaagggagttaaaatcttaataggataatgtgtcatgcatcaaacttgacacacactatgctattttgcgacatttgcaaaatctatgttca |
28334016 |
T |
|
| Q |
109 |
acttnnnnnnnnnttagttaacactattgcactgaaacttgttggtagcttaggcatcacctctttgcaaaaatggaacacagaagtttggtgtcatact |
208 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28334017 |
acttaaaaaaaa-ttagttaacactattgcactgaaacttgttggtagcttagacatcacctctttgcaaaaatggaacacagaagtttggtgtcatact |
28334115 |
T |
|
| Q |
209 |
tctttctcattgccattggaatttgaaccaaaatcattggataaatgcacacagatccttcaacatcatcaaccttgtttggtgatatacctctttctca |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28334116 |
tctttctcattgccattggaatttgaaccaaaatcattggataaatgcacacagatccttcaacatcatcaaccttgtttggtgatatacctctttctca |
28334215 |
T |
|
| Q |
309 |
ttgcac |
314 |
Q |
| |
|
|||||| |
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|
| T |
28334216 |
ttgcac |
28334221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 126 - 285
Target Start/End: Original strand, 47961754 - 47961914
Alignment:
| Q |
126 |
ttaacactattgcactgaaacttgttggtagcttaggcatcacctctttgcaaaaatggaacacagaagtttggtgtcatacttctttctcattgc-cat |
224 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||| | |||||||||| ||||||||| ||| ||||||||||||| ||||| ||||||||||||| ||| |
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|
| T |
47961754 |
ttaacactattgcacggaaacttgctggtagcttcgaaatcacctcttagcaaaaatgaaacgcagaagtttggtgacatacctctttctcattgcacat |
47961853 |
T |
|
| Q |
225 |
tggaatttgaaccaaaatcattggataaatgcacacagatccttcaacatcatcaaccttg |
285 |
Q |
| |
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||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
47961854 |
tggaatttgaaccaaaaccattggataaatgcatacagatccttcaacatcatcaaccttg |
47961914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 285 - 477
Target Start/End: Original strand, 47961822 - 47962006
Alignment:
| Q |
285 |
gtttggtgatatacctctttctcattgcacattggaatttgactcaaaatcattgtataaatgcacacagatccattaacatcatcaaccttgaatggtt |
384 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| |||||||| | ||||||||||||||||||||| | |
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| T |
47961822 |
gtttggtgacatacctctttctcattgcacattggaatttgaaccaaaaccattggataaatgcatacagatccttcaacatcatcaaccttgaatggat |
47961921 |
T |
|
| Q |
385 |
gcccgttaatccttggcttaacttactggaatttgatccaaaagcaccccaaacaaagaagcatacagtccacgaattcgatgagaaacaaaa |
477 |
Q |
| |
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| |||||||||||||||||| | || ||||||| |||||||| ||||||||||| | |||||| |||| ||| |||||||||| |
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|
| T |
47961922 |
ccatgttaatccttggcttaaccttcttaaatttga--------caccccaatcaaagaagcatgcggtccacaaattggataagaaacaaaa |
47962006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 285 - 377
Target Start/End: Original strand, 28334101 - 28334192
Alignment:
| Q |
285 |
gtttggtgatatacctctttctcattgcacattggaatttgactcaaaatcattgtataaatgcacacagatccattaacatcatcaaccttg |
377 |
Q |
| |
|
|||||||| |||| ||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||| | |||||||||||||||| |
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| T |
28334101 |
gtttggtgtcatacttctttctcattgc-cattggaatttgaaccaaaatcattggataaatgcacacagatccttcaacatcatcaaccttg |
28334192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 47961659 - 47961705
Alignment:
| Q |
8 |
agataattctcaagggagttaaaatcttaataggataatgtgtcatg |
54 |
Q |
| |
|
||||||||||||| |||||||||||||||| || ||||||||||||| |
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|
| T |
47961659 |
agataattctcaatggagttaaaatcttaaaagtataatgtgtcatg |
47961705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 295 - 477
Target Start/End: Original strand, 50404100 - 50404282
Alignment:
| Q |
295 |
atacctctttctcattgcacattggaatttgactcaaaatcattgtataaatgcacacagatccattaacatcatcaaccttgaatggttgcccgttaat |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| | |||||| | ||||||||||||||||||||| | ||| || || |
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|
| T |
50404100 |
atacctctttctcattgcacattggaatttgaaccaaaaccattggataaatgcataaagatccttcaacatcatcaaccttgaatggatccccattgat |
50404199 |
T |
|
| Q |
395 |
ccttggcttaacttactggaatttgatccaaaagcaccccaaacaaagaagcatacagtccacgaattcgatgagaaacaaaa |
477 |
Q |
| |
|
| |||||||||| | || ||||||||||||||| ||||| |||||||||||||||| ||||||| ||| ||| |||||||||| |
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|
| T |
50404200 |
cattggcttaaccttcttgaatttgatccaaaaccacccaaaacaaagaagcatacggtccacggattggataagaaacaaaa |
50404282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 175 - 285
Target Start/End: Original strand, 50404071 - 50404182
Alignment:
| Q |
175 |
gcaaaaatggaacacagaagtttggtgtcatacttctttctcattgc-cattggaatttgaaccaaaatcattggataaatgcacacagatccttcaaca |
273 |
Q |
| |
|
|||||||||||| |||||||| |||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||| | ||||||||||||| |
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|
| T |
50404071 |
gcaaaaatggaatgcagaagttcggtgtcatacctctttctcattgcacattggaatttgaaccaaaaccattggataaatgcataaagatccttcaaca |
50404170 |
T |
|
| Q |
274 |
tcatcaaccttg |
285 |
Q |
| |
|
|||||||||||| |
|
|
| T |
50404171 |
tcatcaaccttg |
50404182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 129 - 221
Target Start/End: Complemental strand, 25434427 - 25434335
Alignment:
| Q |
129 |
acactattgcactgaaacttgttggtagcttaggcatcacctctttgcaaaaatggaacacagaagtttggtgtcatacttctttctcattgc |
221 |
Q |
| |
|
||||| |||||| |||||||| ||||||||||| ||||| ||||| ||||||||| ||| ||||| ||| ||| ||||| ||||||||||||| |
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|
| T |
25434427 |
acactgttgcacggaaacttgctggtagcttagacatcatctcttagcaaaaatgaaacgcagaattttagtgacatacctctttctcattgc |
25434335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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