View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20625_low_8 (Length: 483)
Name: NF20625_low_8
Description: NF20625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20625_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 189 - 450
Target Start/End: Complemental strand, 44947331 - 44947063
Alignment:
| Q |
189 |
gttacatgtgtatttatgtagacaaacttatttaatatctaattcgagcaacgccagact-----ctaaactagtattagtatatatgtnnnnnnnnnn- |
282 |
Q |
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| T |
44947331 |
gttacatgtgtattagtgtagacaaacttatttaatatctaacccgagcaacgccgggctgggctctaaactagtattagtatatatgtaaaaaaaaaaa |
44947232 |
T |
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| Q |
283 |
--tagtttgtagaaaatttccttgaataaaaattgtaggacgtataggtgcaatgcaaagtttccttccgttattcattctgacccaaactaacttagtt |
380 |
Q |
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| T |
44947231 |
attagtttgtagaaaatttccttgaataaaa-ttgtaggacgtataggtgcaatgcaaagtttccttccgttattcattctgacccaaactaacttagtt |
44947133 |
T |
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| Q |
381 |
cccgaacttgcggcatatacgactgaacaacacgccacatattaaacaaaccgttgaacaaaactcgctc |
450 |
Q |
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| T |
44947132 |
cccgaacttgcggcatatacgactgaacaacacgccacatattaaacaaaccgttgaacaaaactcgctc |
44947063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 44947502 - 44947442
Alignment:
| Q |
18 |
catatatctctctccacaaattatatacattatattgatatttatgtttgacaagttttct |
78 |
Q |
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| T |
44947502 |
catatatctctctccacaaactatatacattatattgatatttatgtttgacaagttttct |
44947442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 15829533 - 15829575
Alignment:
| Q |
190 |
ttacatgtgtatttatgtagacaaacttatttaatatctaatt |
232 |
Q |
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| T |
15829533 |
ttacatgtgtatttgtgtacacaaacttatttaatatctaatt |
15829575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 46195158 - 46195206
Alignment:
| Q |
210 |
acaaacttatttaatatctaattcgagcaacgccagactctaaactagt |
258 |
Q |
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| T |
46195158 |
acaaatttatttaatatctaacccgggcaacgcccgactctaaactagt |
46195206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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