View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20626_high_11 (Length: 439)
Name: NF20626_high_11
Description: NF20626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20626_high_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 14011856 - 14011436
Alignment:
| Q |
1 |
ttggaagaacttttcagggcttctttgggagcttttgtagcctcaagttcaggaacctataggttttgtccatctcctgactgcccctcaatctatagag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14011856 |
ttggaagaacttttcagggcttctttgggagcttttgtagcctcaagttcaggaacctataggttttgtccatctcctgactgcccctcaatctatagag |
14011757 |
T |
|
| Q |
101 |
ttgcagatcccgacacagctagtgcgccatttgtttgtggggcatgttattcagagacttgtaccaggtgccacatagagtatcatccgtacgtttcatg |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14011756 |
ttgcagatcccgacacagctagtgttccatttgtttgtggggcatgttattcagagacttgtaccaggtgccatatagagtatcatccgtacgtttcatg |
14011657 |
T |
|
| Q |
201 |
tgagagataccgacaattcaaggatgatccggattcttctctgagggattggtgcaaagggaaagaacaagtcaagaattgcccggcatgtgggcatgta |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14011656 |
tgagagataccgacaattcaaggatgacccggattcttctctgagggattggtgcaaagggaaagaacaagttaagaattgcccggcatgtgggcatgta |
14011557 |
T |
|
| Q |
301 |
attgagaaggtagatgggtgcaatcacattgagtgcaaatgtggaaaacatatctgctgggtttgcttagagttctttacaaccagtggtgaatgttata |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14011556 |
attgagaaggtagatgggtgcaatcacattgagtgcaaatgtggaaaacatatctgctgggtttgcttagagttctttacaaccagtggtgaatgttata |
14011457 |
T |
|
| Q |
401 |
gccatatggatactatacact |
421 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
14011456 |
gccatatggatactatacact |
14011436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 3882071 - 3882491
Alignment:
| Q |
1 |
ttggaagaacttttcagggcttctttgggagcttttgtagcctcaagttcaggaacctataggttttgtccatctcctgactgcccctcaatctatagag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3882071 |
ttggaagaacttttcagggcttctttgggagcttttgtagcctcaagttcaggaacctataggttttgtccatctcctgactgcccctcaatctatagag |
3882170 |
T |
|
| Q |
101 |
ttgcagatcccgacacagctagtgcgccatttgtttgtggggcatgttattcagagacttgtaccaggtgccacatagagtatcatccgtacgtttcatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3882171 |
ttgcagatcccgacacagctagtgcgccatttgtttgtggggcatgttattcagagacttgtaccaggtgccatatagagtatcatccgtacgtttcatg |
3882270 |
T |
|
| Q |
201 |
tgagagataccgacaattcaaggatgatccggattcttctctgagggattggtgcaaagggaaagaacaagtcaagaattgcccggcatgtgggcatgta |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3882271 |
tgagagataccgacaattcaaggatgacccggattcttctctgagggattggtgcaaagggaaagaacaagttaagaattgcccggcatgtgggcatgta |
3882370 |
T |
|
| Q |
301 |
attgagaaggtagatgggtgcaatcacattgagtgcaaatgtggaaaacatatctgctgggtttgcttagagttctttacaaccagtggtgaatgttata |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3882371 |
attgagaaggtagatgggtgcaatcacattgagtgcaagtgtggaaaacatatttgctgggtttgcttagagttctttacaaccagcggtgaatgttata |
3882470 |
T |
|
| Q |
401 |
gccatatggatactatacact |
421 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
3882471 |
gccatatggatactatacact |
3882491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 39317321 - 39316923
Alignment:
| Q |
1 |
ttggaagaacttttcagggcttctttgggagcttttgtagcctcaagttcaggaacctataggttttgtccatctcctgactgcccctcaatctatagag |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| || ||||| ||||| ||||||||||| || |||||||||||||| ||| | ||| ||| |
|
|
| T |
39317321 |
ttggacgaacttttcagggcttctttgggagcttttgtagcttcgagttcgggaacttataggttttgcccgtctcctgactgcccttcagtttatcgag |
39317222 |
T |
|
| Q |
101 |
ttgcagatcccgacacagctagtgcgccatttgtttgtggggcatgttattcagagacttgtaccaggtgccacatagagtatcatccgtacgtttcatg |
200 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||| ||| ||||||| |
|
|
| T |
39317221 |
ttgcagattccgacacagctagtgagccatttgtttgtggggcatgttattcagagacatgtaccaagtgccacttagagtatcatccatacctttcatg |
39317122 |
T |
|
| Q |
201 |
tgagagataccgacaattcaaggatgatccggattcttctctgagggattggtgcaaagggaaagaacaagtcaagaattgcccggcatgtgggcatgta |
300 |
Q |
| |
|
|||||||||||| || |||||||||| || || || ||||||| ||| ||||| |||||||||||||||||||||| || || |||||||| || |
|
|
| T |
39317121 |
cgagagataccgagaactcaaggatgacccagactcatctctgaaggagtggtgtaaagggaaagaacaagtcaagagctgttttgcttgtgggcaaata |
39317022 |
T |
|
| Q |
301 |
attgagaaggtagatgggtgcaatcacattgagtgcaaatgtggaaaacatatctgctgggtttgcttagagttctttacaaccagtggtgaatgttat |
399 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||| || ||||||||| |||||||||||||||| ||| ||||||||| |||| |||||||||| |
|
|
| T |
39317021 |
attgagaagatagatgggtgcaatcacgttgagtgcaagtgcggaaaacatgtctgctgggtttgcttggagatctttacaagtagtgatgaatgttat |
39316923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University