View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20626_high_15 (Length: 379)

Name: NF20626_high_15
Description: NF20626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20626_high_15
NF20626_high_15
[»] chr7 (1 HSPs)
chr7 (17-361)||(19808671-19809014)
[»] chr2 (27 HSPs)
chr2 (142-361)||(39138535-39138757)
chr2 (142-336)||(39152948-39153145)
chr2 (142-343)||(39472853-39473063)
chr2 (142-339)||(39396745-39396945)
chr2 (153-339)||(39380587-39380776)
chr2 (146-341)||(39216550-39216748)
chr2 (247-342)||(39196600-39196695)
chr2 (247-343)||(44624779-44624875)
chr2 (145-339)||(39604208-39604405)
chr2 (243-336)||(39421279-39421372)
chr2 (248-343)||(39371115-39371210)
chr2 (145-339)||(39493532-39493729)
chr2 (249-343)||(39387583-39387677)
chr2 (246-339)||(39126482-39126575)
chr2 (247-343)||(39205831-39205927)
chr2 (265-339)||(39425626-39425700)
chr2 (145-333)||(39144488-39144679)
chr2 (148-343)||(39188843-39189041)
chr2 (142-343)||(44615295-44615502)
chr2 (246-331)||(39099583-39099668)
chr2 (247-339)||(44895200-44895292)
chr2 (300-343)||(39413118-39413161)
chr2 (254-343)||(39223715-39223804)
chr2 (142-195)||(44624668-44624721)
chr2 (247-339)||(2362676-2362768)
chr2 (149-196)||(39425772-39425819)
chr2 (148-197)||(39099482-39099531)
[»] chr5 (2 HSPs)
chr5 (254-343)||(33562293-33562382)
chr5 (243-339)||(17060639-17060735)
[»] chr8 (2 HSPs)
chr8 (251-343)||(45342966-45343058)
chr8 (291-339)||(44730156-44730204)
[»] chr6 (1 HSPs)
chr6 (142-341)||(16114256-16114458)


Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 17 - 361
Target Start/End: Original strand, 19808671 - 19809014
Alignment:
Q  17 aatttcaattctttacaagtgtgtgattgtatatttatctctgattagggaacctttccccagagaatattcaataataaacaataatattcagttgttt 116  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19808671 aatttcaattcattacaagtgtgtgattgtatatttatctctgattaggaaacctttccccagagaatattcaataataaacaataatattcagttgttt 19808770  T
Q  117 atcctatttggtaccagtttctatcagaatcatcagatccaacaaaagttgttttggatataatacaaaacccaattattccatggtgtaacgagggaga 216  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  19808771 atcctatt-ggtaccagtttctatcagaatcatcagatccaacaaaagttgttttggatataatacaaaacccaattattccacgatgtaacgagggaga 19808869  T
Q  217 ccatgctgttattgatggtagcagtgtctttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagcta 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19808870 ccatgctgttattgatggtagcagtgtctttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagcta 19808969  T
Q  317 gcacttgatttgaaagctaacatgaaaagtactgaaaattctctg 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  19808970 gcacttgatttgaaagctaacatgaaaagtactgaaaattctctg 19809014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 142 - 361
Target Start/End: Original strand, 39138535 - 39138757
Alignment:
Q  142 agaatcatcagatccaacaaaagttgttttggatataatacaaaacccaattattccatggtgtaacgagggagaccatgctgt---tattgatggtagc 238  Q
    |||||||||||||||| ||||||||||||||||||||||||| || |||||||||||| |||||||  | ||||| ||||||||   |||||||| | ||    
T  39138535 agaatcatcagatccagcaaaagttgttttggatataatacagaagccaattattccacggtgtaagaatggagaacatgctgtgattattgatgatggc 39138634  T
Q  239 agtgtctttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaaca 338  Q
     |  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| || ||||||||||||    
T  39138635 tgcatctttctgctagaacaactgatgagaatctcaccgaagattaaacctgatgtaagagaagaagcattgaagctagcacttaatctgaaagctaaca 39138734  T
Q  339 tgaaaagtactgaaaattctctg 361  Q
    |||||| ||||||||||||||||    
T  39138735 tgaaaaatactgaaaattctctg 39138757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 142 - 336
Target Start/End: Original strand, 39152948 - 39153145
Alignment:
Q  142 agaatcatcagatccaacaaaagttgttttggatataatacaaaacccaattattccatggtgtaacgagggagaccatgctgttatt---gatggtagc 238  Q
    |||||||||||||||| ||||| |||| |||||||||||||| ||||||||||||||| ||| |||  | |||||||||||||| |||   |||||||||    
T  39152948 agaatcatcagatccagcaaaaattgtgttggatataatacagaacccaattattccacggtataagaacggagaccatgctgtgattatagatggtagc 39153047  T
Q  239 agtgtctttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaa 336  Q
     |  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| || |||| |||||||||||||||    
T  39153048 tgcatctttctgctagaacaactgatgagaatctcaccgaagattaaaccttgtgtaagagaagaagcattgaaactcgcacatgatttgaaagctaa 39153145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 142 - 343
Target Start/End: Complemental strand, 39473063 - 39472853
Alignment:
Q  142 agaatcatcagatccaacaaaagttgttttggatataatacaaaacccaattattccatggtgtaacgagggagaccatgctg---ttattgatggtagc 238  Q
    |||||||||||||||| ||||| ||||| ||||||||||||  ||||| ||||||||| |||||||  |||||||||||||||   ||||||||||||||    
T  39473063 agaatcatcagatccagcaaaatttgttctggatataatactgaacccgattattccacggtgtaagaagggagaccatgctgtgattattgatggtagc 39472964  T
Q  239 agtgtctttctgctagaacaactgatgagaatctcacc------gaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaag 332  Q
    |   |||||||| | ||||| ||||||| |||||||||      ||||||||  ||| |||||| | ||||  |||||||||| ||||||||||||||||    
T  39472963 aacatctttctgttggaacagctgatgaaaatctcaccgtcactgaagattagcccttgtgtaaaaaaagacgcattgaagctcgcacttgatttgaaag 39472864  T
Q  333 ctaacatgaaa 343  Q
     ||||||||||    
T  39472863 ttaacatgaaa 39472853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 142 - 339
Target Start/End: Complemental strand, 39396945 - 39396745
Alignment:
Q  142 agaatcatcagatccaacaaaagttgttttggatataatacaaaacccaattattccatggtgtaacgagggagaccatgctgt---tattgatggtagc 238  Q
    |||||||||||||||| ||| | ||||||||||||||||||||||||| |||||||||  ||||||  |||||||| ||| |||   |||||| | ||||    
T  39396945 agaatcatcagatccatcaagacttgttttggatataatacaaaaccccattattccactgtgtaagaagggagacaatggtgtggttattgaggatagc 39396846  T
Q  239 agtgtctttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaaca 338  Q
        |||   |||||||| ||||||||||||||||||| |  |||| |||| |||||||||||||| || |||||||||||| |||||||| |||| |||    
T  39396845 cacatctacgtgctagaagaactgatgagaatctcaccaactattagaccttgtgtaagagaagaagcactgaagctagcacatgatttgagagcttaca 39396746  T
Q  339 t 339  Q
    |    
T  39396745 t 39396745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 153 - 339
Target Start/End: Complemental strand, 39380776 - 39380587
Alignment:
Q  153 atccaacaaaagttgttttggatataatacaaaacccaattattccatggtgtaacgagggagaccatgctgttattg---atggtagcagtgtctttct 249  Q
    ||||| ||||||||||||| ||||||||||| || || |||| ||||  ||| ||  |||||||| ||||||| |||    ||| |||| |  |||||||    
T  39380776 atccagcaaaagttgttttagatataatacataaaccgattaatccactgtgcaagaagggagacaatgctgtgattttttatgatagccgcatctttct 39380677  T
Q  250 gctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacat 339  Q
    ||||||||||||||||||| |||||||||| ||| ||  | |||||||||||||| || ||| |||||||||||||||||||||| ||||    
T  39380676 gctagaacaactgatgagagtctcaccgaatattgaagattgtgtaagagaagaagcactgacgctagcacttgatttgaaagcttacat 39380587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 146 - 341
Target Start/End: Original strand, 39216550 - 39216748
Alignment:
Q  146 tcatcagatccaacaaaagttgttttggatataatacaaaacccaattattccatggtgtaacgagggagaccatgctgt---tattgatggtagcagtg 242  Q
    |||||||||||| ||| | ||||||||||||| ||||| ||||| | ||||| || ||||||  |||||||| |||||||   ||||| || |  |  |     
T  39216550 tcatcagatccatcaagacttgttttggatatgatacagaaccctactattcaattgtgtaagaagggagacaatgctgtgattattgctgattaccata 39216649  T
Q  243 tctttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatga 341  Q
    | | |  ||||||||||||||||| |||||||||  | ||||||||| |||||||||||||| |||||||||||||| ||||||||||| |||||||||    
T  39216650 tttattcgctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatga 39216748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 247 - 342
Target Start/End: Complemental strand, 39196695 - 39196600
Alignment:
Q  247 tctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatgaa 342  Q
    |||||| |||||||||||||||||||||||  | ||||||||| |||| ||| ||||| |||||||||||||| ||||||||||||||||||||||    
T  39196695 tctgctggaacaactgatgagaatctcaccagatattaaaccttgtgtgagaaaagaagcattgaagctagcatttgatttgaaagctaacatgaa 39196600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 247 - 343
Target Start/End: Original strand, 44624779 - 44624875
Alignment:
Q  247 tctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatgaaa 343  Q
    |||||||||| ||||||||| ||||||||| || ||||||||| |||||||||| ||| ||||||||||||| | ||| ||||||||||||||||||    
T  44624779 tctgctagaaaaactgatgacaatctcaccaaatattaaaccttgtgtaagagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaa 44624875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 145 - 339
Target Start/End: Original strand, 39604208 - 39604405
Alignment:
Q  145 atcatcagatccaacaaaagttgttttggatataatacaaaacccaattattccatggtgtaacgagggagaccatgctgt---tattgatggtagcagt 241  Q
    ||||||||||||| ||||||||||||||||||||||||| || || ||||||| |  || |||   ||||||| |||||||   |||||||| |||        
T  39604208 atcatcagatccatcaaaagttgttttggatataatacagaatcccattattcaaaagtataagatgggagacaatgctgtaattattgatgatagagac 39604307  T
Q  242 gtctttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacat 339  Q
     |  |||||||  |||||||||||||||||  |||  | ||||||||| |||||||||||||| || |||||||||||||| |||||||| |||||||    
T  39604308 attcttctgctcaaacaactgatgagaatcaaaccacatattaaacctcgtgtaagagaagaagcaatgaagctagcacttaatttgaaatctaacat 39604405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 243 - 336
Target Start/End: Complemental strand, 39421372 - 39421279
Alignment:
Q  243 tctttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaa 336  Q
    |||||||||||||||||||||||| |||||||||  | |||||| || |||||| ||||||| |||||||||| || |||||||||||||||||    
T  39421372 tctttctgctagaacaactgatgaaaatctcaccacatattaaaacttgtgtaaaagaagaagcattgaagctcgctcttgatttgaaagctaa 39421279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 248 - 343
Target Start/End: Original strand, 39371115 - 39371210
Alignment:
Q  248 ctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatgaaa 343  Q
    |||||||||||||| |||| ||||||||| || ||| | ||| |||||||||| ||| |||||||||||||||||||| ||||||| |||||||||    
T  39371115 ctgctagaacaacttatgaaaatctcaccaaatattgagccttgtgtaagagatgaagcattgaagctagcacttgatatgaaagccaacatgaaa 39371210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 145 - 339
Target Start/End: Complemental strand, 39493729 - 39493532
Alignment:
Q  145 atcatcagatccaacaaaagttgttttggatataatacaaaacccaattattccatggtgtaacgagggagaccatgctg---ttattgatggtagcagt 241  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||| ||||||  |  ||||||    |||||| ||||||   ||||||||| ||||       
T  39493729 atcatcagatccatcaaaagttgttttggatataatacagaaccccattattaaaaagtgtaagataggagacgatgctgcaattattgatgatagccac 39493630  T
Q  242 gtctttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacat 339  Q
     |  ||||||| ||| |||||| || |||||||||  | |||| ||||  ||||| ||||||| || ||||||||||||||||| |||||||||||||    
T  39493629 attcttctgctcgaagaactgaggaaaatctcaccagatattagacctcatgtaaaagaagaagcaatgaagctagcacttgatatgaaagctaacat 39493532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 249 - 343
Target Start/End: Complemental strand, 39387677 - 39387583
Alignment:
Q  249 tgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatgaaa 343  Q
    ||||||||||||||||||||| |||||| || ||| || || |||||| | ||||| ||||||||||||| | |||||| |||||||||||||||    
T  39387677 tgctagaacaactgatgagaacctcaccaaaaattgaaacttgtgtaaaaaaagaagcattgaagctagcgcgtgatttaaaagctaacatgaaa 39387583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 246 - 339
Target Start/End: Original strand, 39126482 - 39126575
Alignment:
Q  246 ttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacat 339  Q
    ||||||| ||||||||||||||||||||||  || ||| ||||| |||||||||||||| || |||||||||| ||| | |||||| |||||||    
T  39126482 ttctgctcgaacaactgatgagaatctcactaaatattgaacctcgtgtaagagaagaagcaatgaagctagctcttaaattgaaatctaacat 39126575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 247 - 343
Target Start/End: Complemental strand, 39205927 - 39205831
Alignment:
Q  247 tctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatgaaa 343  Q
    |||||| |||||||||||||||||||||||    ||| ||||| |||| |||||| || |||||||||||||| |||| ||||||||||| ||||||    
T  39205927 tctgcttgaacaactgatgagaatctcaccagttattgaaccttgtgtgagagaaaaagcattgaagctagcatttgacttgaaagctaagatgaaa 39205831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 265 - 339
Target Start/End: Complemental strand, 39425700 - 39425626
Alignment:
Q  265 gagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacat 339  Q
    ||||||||||||| | |||| ||||| ||||| ||||||| || ||||| |||||||||||||||||||||||||    
T  39425700 gagaatctcaccggatattagacctgatgtaaaagaagaagcaatgaagttagcacttgatttgaaagctaacat 39425626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 145 - 333
Target Start/End: Original strand, 39144488 - 39144679
Alignment:
Q  145 atcatcagatccaacaaaagttgttttggatataatacaaaacccaattattccatggtgtaacgagggagaccatgctg---ttattgatggtagcagt 241  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||| ||||||  |  ||||||    |||||| ||||||   ||||||||| ||||       
T  39144488 atcatcagatccatcaaaagttgttttggatataatacagaacccgattattaaaaagtgtaagataggagacgatgctgtaattattgatgatagccac 39144587  T
Q  242 gtctttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagc 333  Q
     |  |||||||  |  |||||| || ||||||||   | |||||||||  ||||| ||||||| || |||||||||||||||||||||||||    
T  39144588 attcttctgctcaaggaactgaggaaaatctcactagatattaaacctcatgtaaaagaagaagcaatgaagctagcacttgatttgaaagc 39144679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 148 - 343
Target Start/End: Complemental strand, 39189041 - 39188843
Alignment:
Q  148 atcagatccaacaaaagttgttttggatataatacaaaacccaattattccatggtgtaacgagggagaccatgctg---ttattgatggtagcagtgtc 244  Q
    |||||||||  ||||||||||||||||||||||||| ||||| ||||||| |  |||| |   ||||||| ||| ||   ||||||||| ||||    |     
T  39189041 atcagatccttcaaaagttgttttggatataatacagaaccccattattcaaaagtgtgagatgggagacaatgttgtaattattgatgatagccacatt 39188942  T
Q  245 tttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatgaaa 343  Q
     |||||||   |  ||||||||||||||||||  | |||||||||  ||||||||| ||  || |||| |||||||||||||| |||||||||||||||    
T  39188941 cttctgctcatagtactgatgagaatctcacctgacattaaacctcatgtaagagaggatgcaatgaaactagcacttgatttaaaagctaacatgaaa 39188843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 343
Target Start/End: Original strand, 44615295 - 44615502
Alignment:
Q  142 agaatcatcagatccaacaaaagttgttttggatataatacaaaacccaattattccatggtgtaacgagggagaccatgctgt---tattgatggtagc 238  Q
    |||||||||||||||| ||||| |||||||||||||||||| |||||| |  ||||||  |  |||  | |||||| | || ||   ||||||||   ||    
T  44615295 agaatcatcagatccagcaaaacttgttttggatataatactaaaccctacgattccactgcctaagaaaggagacaaagcggtgattattgatgaaggc 44615394  T
Q  239 agtgtctttctgctagaacaactgatgagaatctcaccgaagatta---aacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagcta 335  Q
     |  ||| |||||||||||||||||||| ||||||||| || ||||   || || |||||||||| ||| | |||||||||||   ||| ||||||||||    
T  44615395 tggatctatctgctagaacaactgatgataatctcaccaaatattattaaatcttgtgtaagagatgaagcgttgaagctagcgtgtgagttgaaagcta 44615494  T
Q  336 acatgaaa 343  Q
    ||||||||    
T  44615495 acatgaaa 44615502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 331
Target Start/End: Original strand, 39099583 - 39099668
Alignment:
Q  246 ttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaa 331  Q
    ||||||| |||||||||||||||||||||||  | || |||||| |||||||||||||| |  ||||||| |||||| | ||||||    
T  39099583 ttctgctcgaacaactgatgagaatctcaccacatatcaaaccttgtgtaagagaagaagcgatgaagctggcacttaagttgaaa 39099668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 247 - 339
Target Start/End: Complemental strand, 44895292 - 44895200
Alignment:
Q  247 tctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacat 339  Q
    ||||||||||  ||||||| |||| ||||| |  ||||||||| ||||||||||| || ||||||||||||||| | | || |||||||||||    
T  44895292 tctgctagaaacactgatgggaatgtcaccaattattaaacctcgtgtaagagaacaagcattgaagctagcacataaattcaaagctaacat 44895200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 300 - 343
Target Start/End: Complemental strand, 39413161 - 39413118
Alignment:
Q  300 aagaaacattgaagctagcacttgatttgaaagctaacatgaaa 343  Q
    ||||| |||||||||||||||||||||||||||||||| |||||    
T  39413161 aagaagcattgaagctagcacttgatttgaaagctaacttgaaa 39413118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 343
Target Start/End: Original strand, 39223715 - 39223804
Alignment:
Q  254 gaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatgaaa 343  Q
    |||||||||||||||||||||||  | ||| ||||| |||  |||||| || ||||||||||||||  |||||| ||||  |||||||||    
T  39223715 gaacaactgatgagaatctcaccagatattgaaccttgtgagagagaaaaagcattgaagctagcatatgatttaaaagaaaacatgaaa 39223804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 44624668 - 44624721
Alignment:
Q  142 agaatcatcagatccaacaaaagttgttttggatataatacaaaacccaattat 195  Q
    |||||||||||||||| ||||| ||||||||||||||||||  ||||| |||||    
T  44624668 agaatcatcagatccagcaaaaattgttttggatataatactgaaccccattat 44624721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 339
Target Start/End: Original strand, 2362676 - 2362768
Alignment:
Q  247 tctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacat 339  Q
    |||||| |||||||||||||||||||||||  |  ||||||||  |||  |||||||| || |||||||||||||| |  |||||||| ||||    
T  2362676 tctgctcgaacaactgatgagaatctcaccacatgttaaacctcatgtgcgagaagaagcaatgaagctagcacttaaactgaaagcttacat 2362768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 39425819 - 39425772
Alignment:
Q  149 tcagatccaacaaaagttgttttggatataatacaaaacccaattatt 196  Q
    ||||||||| |||||||||||||||| |||||||| ||||| ||||||    
T  39425819 tcagatccatcaaaagttgttttggaaataatacagaaccctattatt 39425772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 39099482 - 39099531
Alignment:
Q  148 atcagatccaacaaaagttgttttggatataatacaaaacccaattattc 197  Q
    |||||||||| ||||||| ||||||||||||||||| || || |||||||    
T  39099482 atcagatccatcaaaagtcgttttggatataatacagaatcccattattc 39099531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 254 - 343
Target Start/End: Original strand, 33562293 - 33562382
Alignment:
Q  254 gaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatgaaa 343  Q
    |||||||||||||||||||||||  | ||| ||||| |||| ||| ||||| |||||||||||||| |||||||||||||||||||||||    
T  33562293 gaacaactgatgagaatctcaccagatattgaaccttgtgtgagaaaagaagcattgaagctagcatttgatttgaaagctaacatgaaa 33562382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 243 - 339
Target Start/End: Original strand, 17060639 - 17060735
Alignment:
Q  243 tctttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacat 339  Q
    ||||| |||||||||||||||||| ||| ||||| || |||||| || |||||| ||| ||| | ||||||||||||| ||| ||||||||||||||    
T  17060639 tctttatgctagaacaactgatgataatgtcaccaaatattaaatcttgtgtaaaagacgaagctttgaagctagcacatgagttgaaagctaacat 17060735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 251 - 343
Target Start/End: Original strand, 45342966 - 45343058
Alignment:
Q  251 ctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatgaaa 343  Q
    ||||||||||||||||||||||  || |  ||||||||| |||||||||||||| |||| |||||||||||||| |||||||||||| |||||    
T  45342966 ctagaacaactgatgagaatcttgccaagtattaaaccttgtgtaagagaagaagcattcaagctagcacttgagttgaaagctaacgtgaaa 45343058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 44730156 - 44730204
Alignment:
Q  291 gtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacat 339  Q
    |||||||||| ||| | ||||||||||||| ||| ||||||||||||||    
T  44730156 gtgtaagagatgaagctttgaagctagcacatgagttgaaagctaacat 44730204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 142 - 341
Target Start/End: Original strand, 16114256 - 16114458
Alignment:
Q  142 agaatcatcagatccaacaaaagttgttttggatataatacaaaacccaattattccatggtgtaacgagggagaccatgctgt---tattgatggtagc 238  Q
    ||||||| |||||||| ||| | ||||||||||||||||||| |||||   || ||||  ||||||  |||||||| |||||||   ||||||||   ||    
T  16114256 agaatcagcagatccatcaagacttgttttggatataatacagaaccccggtactccactgtgtaagaagggagacaatgctgtgattattgatgaatgc 16114355  T
Q  239 agtgtctttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaaca 338  Q
        ||| |||| ||||| ||||||||||||| ||||| |  ||||||||| ||||||||||| || ||||||||||||| |  |||||||||||| |||    
T  16114356 cacatctatctgttagaagaactgatgagaatatcaccaactattaaacctcgtgtaagagaaaaagcattgaagctagcgcgcgatttgaaagcttaca 16114455  T
Q  339 tga 341  Q
    |||    
T  16114456 tga 16114458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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