View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20626_high_2 (Length: 624)

Name: NF20626_high_2
Description: NF20626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20626_high_2
NF20626_high_2
[»] chr4 (15 HSPs)
chr4 (429-608)||(34097692-34097868)
chr4 (235-314)||(34097873-34097952)
chr4 (130-199)||(19129556-19129626)
chr4 (143-231)||(49708685-49708773)
chr4 (185-231)||(52916699-52916745)
chr4 (158-231)||(24472582-24472655)
chr4 (183-231)||(45534028-45534076)
chr4 (183-234)||(24471827-24471878)
chr4 (168-231)||(55880538-55880601)
chr4 (133-201)||(231999-232067)
chr4 (183-231)||(5825334-5825382)
chr4 (195-231)||(5826244-5826280)
chr4 (182-226)||(17088717-17088761)
chr4 (182-226)||(17096692-17096736)
chr4 (183-231)||(55879794-55879842)
[»] chr3 (11 HSPs)
chr3 (33-231)||(32355864-32356063)
chr3 (176-233)||(23379330-23379387)
chr3 (133-232)||(44384513-44384612)
chr3 (183-231)||(42996325-42996373)
chr3 (187-232)||(10343329-10343374)
chr3 (184-232)||(53714486-53714534)
chr3 (185-231)||(50306525-50306571)
chr3 (183-231)||(7359842-7359890)
chr3 (183-223)||(31892185-31892225)
chr3 (183-231)||(42146800-42146847)
chr3 (191-231)||(42147556-42147596)
[»] scaffold1052 (3 HSPs)
scaffold1052 (33-232)||(329-528)
scaffold1052 (158-231)||(1541-1614)
scaffold1052 (1-32)||(580-611)
[»] chr2 (10 HSPs)
chr2 (33-231)||(6182092-6182290)
chr2 (123-232)||(6197914-6198023)
chr2 (158-232)||(42946444-42946518)
chr2 (158-231)||(6183090-6183163)
chr2 (183-231)||(6198903-6198951)
chr2 (143-234)||(5142514-5142605)
chr2 (185-231)||(26021913-26021959)
chr2 (168-233)||(5504342-5504407)
chr2 (185-225)||(9371844-9371884)
chr2 (183-231)||(30901384-30901432)
[»] chr1 (16 HSPs)
chr1 (33-113)||(5100943-5101023)
chr1 (133-233)||(4530191-4530291)
chr1 (158-231)||(5101826-5101899)
chr1 (159-231)||(22425497-22425569)
chr1 (184-231)||(45597624-45597671)
chr1 (168-226)||(37689907-37689965)
chr1 (182-231)||(22862599-22862648)
chr1 (184-232)||(13536997-13537045)
chr1 (1-32)||(5101075-5101106)
chr1 (185-231)||(3788435-3788481)
chr1 (183-232)||(4125417-4125466)
chr1 (182-231)||(22424796-22424845)
chr1 (191-231)||(15374705-15374745)
chr1 (182-226)||(22861879-22861923)
chr1 (183-231)||(51129373-51129421)
chr1 (191-231)||(51132317-51132357)
[»] chr8 (9 HSPs)
chr8 (123-231)||(510453-510561)
chr8 (123-231)||(8491468-8491576)
chr8 (183-231)||(45163117-45163165)
chr8 (183-226)||(31694167-31694210)
chr8 (195-232)||(788484-788521)
chr8 (158-231)||(35886085-35886158)
chr8 (183-231)||(511443-511491)
chr8 (183-231)||(39656914-39656962)
chr8 (172-231)||(40647167-40647227)
[»] chr5 (13 HSPs)
chr5 (168-231)||(6353684-6353747)
chr5 (143-197)||(326241-326295)
chr5 (168-232)||(30003551-30003615)
chr5 (130-202)||(17591331-17591404)
chr5 (130-202)||(36912939-36913012)
chr5 (182-233)||(19855060-19855111)
chr5 (188-231)||(30002864-30002907)
chr5 (130-202)||(36912274-36912344)
chr5 (194-231)||(6354696-6354733)
chr5 (130-202)||(17590593-17590666)
chr5 (182-231)||(19854336-19854385)
chr5 (158-231)||(42310849-42310922)
chr5 (183-231)||(1282967-1283015)
[»] chr7 (8 HSPs)
chr7 (133-231)||(37692844-37692942)
chr7 (182-231)||(36661685-36661734)
chr7 (130-166)||(14735422-14735458)
chr7 (183-231)||(28869774-28869822)
chr7 (143-197)||(10200129-10200183)
chr7 (130-202)||(14736117-14736190)
chr7 (183-231)||(9378729-9378777)
chr7 (183-231)||(34853334-34853382)
[»] scaffold1657 (1 HSPs)
scaffold1657 (135-231)||(909-1005)
[»] chr6 (4 HSPs)
chr6 (182-231)||(6841955-6842004)
chr6 (183-231)||(10359680-10359728)
chr6 (182-231)||(6841232-6841281)
chr6 (183-231)||(1528561-1528609)
[»] scaffold0016 (1 HSPs)
scaffold0016 (191-231)||(67247-67287)


Alignment Details
Target: chr4 (Bit Score: 162; Significance: 4e-86; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 429 - 608
Target Start/End: Complemental strand, 34097868 - 34097692
Alignment:
Q  429 accaatgatttttgcacgttgtctcccatgtaaaacatcttgcataattaagcgagtcatgcacttcctcaagaaatcaaataaggtggcgtcatgtatt 528  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34097868 accaatgatttttgcacgttgtctcccatataaaacatcttgcataattaagcgagtcatgcacttcctcaagaaatcaaataaggtggcgtcatgtatt 34097769  T
Q  529 gcaccctgatcatgatgatagcgggtttaacttcttacgacactcctcgatttcttttttcagattgttgcaatgattct 608  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34097768 gcaccctgatca---tgatagcgggtttaacttcttacgacactcctcgatttcttttttcagattgttgcaatgattct 34097692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 235 - 314
Target Start/End: Complemental strand, 34097952 - 34097873
Alignment:
Q  235 agttactggttcacgaacactatacttttactagcaaattttgttgaaatattgttatgcaatagtgcacatatctacat 314  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34097952 agttactggttcacgaacactatccttttactagcaaattttgttgaaatattgttatgcaatagtgcacatatctacat 34097873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 130 - 199
Target Start/End: Complemental strand, 19129626 - 19129556
Alignment:
Q  130 tgaagagactatcataagatcaatgttcatcttaaatataatgg-tcaaaacctactttcctatggtggga 199  Q
    |||||||||||||||||||||||||||| ||||||||  ||||| |||||| | ||||||| |||||||||    
T  19129626 tgaagagactatcataagatcaatgttcctcttaaatcaaatggttcaaaaacaactttcccatggtggga 19129556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 231
Target Start/End: Original strand, 49708685 - 49708773
Alignment:
Q  143 ataagatcaatgttcatcttaaatataatggtcaaaacctactttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    |||| ||| |||||| |||| ||| |||||| || || ||||||| | ||||||||||| ||||||||| |||||||||||||| ||||    
T  49708685 ataaaatctatgttcctctttaatctaatgggcataatctacttttccatggtgggaaattctttccctcacccaccctaaatgccacc 49708773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 52916699 - 52916745
Alignment:
Q  185 tttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    ||||| ||||||| | |||||||||||||||||||||||||||||||    
T  52916699 tttcccatggtggaagaatctttcccttacccaccctaaatgtcacc 52916745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 158 - 231
Target Start/End: Original strand, 24472582 - 24472655
Alignment:
Q  158 atcttaaatataatggtcaaaacctactttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    ||||||||| |||||||||||| ||| |||| || ||||||||| |||||||  | ||||||||||||| ||||    
T  24472582 atcttaaatctaatggtcaaaaactattttcttacggtgggaaactctttcctattcccaccctaaatgccacc 24472655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 45534076 - 45534028
Alignment:
Q  183 actttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    |||||| ||||||||||||||||| ||| ||||||||||||||| ||||    
T  45534076 actttcttatggtgggaaaatcttccccctacccaccctaaatgccacc 45534028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 24471878 - 24471827
Alignment:
Q  183 actttcctatggtgggaaaatctttcccttacccaccctaaatgtcaccaaa 234  Q
    ||||||||||||||||||| ||||| || | ||||||||||||| |||||||    
T  24471878 actttcctatggtgggaaactcttttccattcccaccctaaatgccaccaaa 24471827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 55880538 - 55880601
Alignment:
Q  168 taatggtcaaaacctactttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    |||||||||||| | ||||| ||||  |||| || |||||||||| ||||||||||||||||||    
T  55880538 taatggtcaaaatcaacttttctataatggggaattctttcccttgcccaccctaaatgtcacc 55880601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 231999 - 232067
Alignment:
Q  133 agagactatcataagatcaatgttcatcttaaatataatggtcaaaacctactttcctatggtgggaaa 201  Q
    ||||||||| ||||||||||||||| || |  || ||||||| ||||  |||||||| |||||||||||    
T  231999 agagactatgataagatcaatgttcctcatttatctaatggttaaaatttactttcccatggtgggaaa 232067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 5825382 - 5825334
Alignment:
Q  183 actttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    ||||| ||||||||||||| |||||||| | ||||||||||||| ||||    
T  5825382 actttgctatggtgggaaactctttcccattcccaccctaaatgccacc 5825334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 5826244 - 5826280
Alignment:
Q  195 tgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  5826244 tgggaaactctttccctcacccaccctaaatgtcacc 5826280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 17088717 - 17088761
Alignment:
Q  182 tactttcctatggtgggaaaatctttcccttacccaccctaaatg 226  Q
    ||||||||||||||||  || ||||||||| ||||||||||||||    
T  17088717 tactttcctatggtggagaattctttccctcacccaccctaaatg 17088761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 17096692 - 17096736
Alignment:
Q  182 tactttcctatggtgggaaaatctttcccttacccaccctaaatg 226  Q
    ||||||||||||||||  || ||||||||| ||||||||||||||    
T  17096692 tactttcctatggtggagaattctttccctcacccaccctaaatg 17096736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 55879842 - 55879794
Alignment:
Q  183 actttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    ||||||| ||||||||||| | ||||||| |||||||||||||| ||||    
T  55879842 actttcccatggtgggaaattatttccctcacccaccctaaatgccacc 55879794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 155; Significance: 6e-82; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 33 - 231
Target Start/End: Complemental strand, 32356063 - 32355864
Alignment:
Q  33 tgtagagtttgttggaacttggaaccatggtttctgaaaaaaggcacacacatagacaagataacggtggtagaagaaagtggnnnnnnn-tctagtctg 131  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||        |||||| ||    
T  32356063 tgtagagtttgttggaacttggaaccatggtttctggaaaaaggcacacacatagacaagataacggtggtagaagaaagtggaaaaaaaatctagtgtg 32355964  T
Q  132 aagagactatcataagatcaatgttcatcttaaatataatggtcaaaacctactttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  32355963 aagagactatcataagatcaatgttcatcttaaatctaatggtcaaaacctactttcctatggtggaaaaatctttcccttacccaccctaaatgtcacc 32355864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 23379387 - 23379330
Alignment:
Q  176 aaaacctactttcctatggtgggaaaatctttcccttacccaccctaaatgtcaccaa 233  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  23379387 aaaagctactttcctatagtgggaaaatctttcccttacccaccctaaatgccaccaa 23379330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 133 - 232
Target Start/End: Complemental strand, 44384612 - 44384513
Alignment:
Q  133 agagactatcataagatcaatgttcatcttaaatataatggtcaaaacctactttcctatggtgggaaaatctttcccttacccaccctaaatgtcacca 232  Q
    ||||||||| ||| ||||||||||  | || ||| ||||||| |||| ||||||| ||||| ||||||| ||||| ||| |||||||||||||| |||||    
T  44384612 agagactataatatgatcaatgtttctatttaatctaatggttaaaagctacttttctatgatgggaaattcttttcctcacccaccctaaatgccacca 44384513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 42996325 - 42996373
Alignment:
Q  183 actttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    ||||| ||||||||||||||||||||||||||||| |||||||| ||||    
T  42996325 acttttctatggtgggaaaatctttcccttacccatcctaaatgccacc 42996373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 10343374 - 10343329
Alignment:
Q  187 tcctatggtgggaaaatctttcccttacccaccctaaatgtcacca 232  Q
    ||||||||||| ||||||||||||| |||||||||||||| |||||    
T  10343374 tcctatggtggaaaaatctttccctcacccaccctaaatgccacca 10343329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 53714534 - 53714486
Alignment:
Q  184 ctttcctatggtgggaaaatctttcccttacccaccctaaatgtcacca 232  Q
    |||||| ||||||||||| ||||||||| |||||||||||||| |||||    
T  53714534 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacca 53714486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 50306525 - 50306571
Alignment:
Q  185 tttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    ||||||||||||||||| |||||||| | ||||||||||||| ||||    
T  50306525 tttcctatggtgggaaactctttccccttcccaccctaaatgccacc 50306571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 7359842 - 7359890
Alignment:
Q  183 actttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    ||||||| ||||||||||| |||| | ||||||||||||||||| ||||    
T  7359842 actttcccatggtgggaaagtcttcctcttacccaccctaaatgccacc 7359890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 31892185 - 31892225
Alignment:
Q  183 actttcctatggtgggaaaatctttcccttacccaccctaa 223  Q
    ||||||||||| ||||||||||||||||| |||||| ||||    
T  31892185 actttcctatgatgggaaaatctttccctcacccactctaa 31892225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 42146847 - 42146800
Alignment:
Q  183 actttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    ||||||| |||||||||||||||||||| | ||||||||||||| ||||    
T  42146847 actttcccatggtgggaaaatctttcccat-cccaccctaaatgccacc 42146800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 42147556 - 42147596
Alignment:
Q  191 atggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    |||||||||||||||||||| | ||||||||||||| ||||    
T  42147556 atggtgggaaaatctttccccttcccaccctaaatgccacc 42147596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1052 (Bit Score: 139; Significance: 2e-72; HSPs: 3)
Name: scaffold1052
Description:

Target: scaffold1052; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 33 - 232
Target Start/End: Complemental strand, 528 - 329
Alignment:
Q  33 tgtagagtttgttggaacttggaaccatggtttctgaaaaaaggcacacacatagacaagataacggtggtagaagaaagtggnnnnnnntctagtctga 132  Q
    ||||||||||||||||| |||||||||||| || || |||||||||||||||||||||| |||||||||||||||||||||||       |||  | |||    
T  528 tgtagagtttgttggaatttggaaccatggattttggaaaaaggcacacacatagacaatataacggtggtagaagaaagtggaaaaaaatcttatgtga 429  T
Q  133 agagactatcataagatcaatgttcatcttaaatataatggtcaaaacctactttcctatggtgggaaaatctttcccttacccaccctaaatgtcacca 232  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  428 agagactatcataagatcaatgttcatcttaaatctaatggtcaaaacctactttcctatggtgggaaaatcttttccttacccaccctaaatgtcacca 329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1052; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 231
Target Start/End: Original strand, 1541 - 1614
Alignment:
Q  158 atcttaaatataatggtcaaaacctactttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    ||||||||| |||||||| ||| ||| ||||| |||||||| || |||||||||||||||||||||||| ||||    
T  1541 atcttaaatctaatggtctaaatctattttccaatggtgggtaactctttcccttacccaccctaaatgccacc 1614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1052; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 611 - 580
Alignment:
Q  1 tgaaattgaaaaaccatatgtttatagttata 32  Q
    ||||||||||||||||||||||||||||||||    
T  611 tgaaattgaaaaaccatatgtttatagttata 580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 139; Significance: 2e-72; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 33 - 231
Target Start/End: Complemental strand, 6182290 - 6182092
Alignment:
Q  33 tgtagagtttgttggaacttggaaccatggtttctgaaaaaaggcacacacatagacaagataacggtggtagaagaaagtggnnnnnnntct-agtctg 131  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||       | | ||| ||    
T  6182290 tgtagagtttgttggaacttggaaccatggtttctggaaaaagacacacacatagacaagataacggtggtagaagaaagtggaaaaaaattttagt-tg 6182192  T
Q  132 aagagactatcataagatcaatgttcatcttaaatataatggtcaaaacctactttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6182191 aagagactatcataagatcaatgttcatcttaaatctaatggtcaaaatctactttcctatggtggaaaaatctttcccttacccaccctaaatgtcacc 6182092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 232
Target Start/End: Complemental strand, 6198023 - 6197914
Alignment:
Q  123 tctagtctgaagagactatcataagatcaatgttcatcttaaatataatggtcaaaacctactttcctatggtgggaaaatctttcccttacccacccta 222  Q
    |||||| ||||||||  || ||||||||| ||||| | || ||| ||||||| |||| ||||||||| ||  |||| || ||||||||||||||||||||    
T  6198023 tctagtatgaagagaaaataataagatcagtgttcctatttaatttaatggttaaaaactactttcccataatggggaattctttcccttacccacccta 6197924  T
Q  223 aatgtcacca 232  Q
    |||| |||||    
T  6197923 aatgccacca 6197914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 232
Target Start/End: Original strand, 42946444 - 42946518
Alignment:
Q  158 atcttaaatataatggtcaaaacctactttcctatggtgggaaaatctttcccttacccaccctaaatgtcacca 232  Q
    ||||||||| |||||||| ||| ||| |||  |||||||||||| |||||||| | ||||||||||||| |||||    
T  42946444 atcttaaatctaatggtcgaaagctatttttgtatggtgggaaactctttcccattcccaccctaaatgccacca 42946518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 158 - 231
Target Start/End: Original strand, 6183090 - 6183163
Alignment:
Q  158 atcttaaatataatggtcaaaacctactttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    ||||||||| |||||||| ||| ||| ||| | |||||||| || | |||||||||||||||||||||| ||||    
T  6183090 atcttaaatctaatggtctaaatctatttttccatggtgggtaactttttcccttacccaccctaaatgccacc 6183163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 6198903 - 6198951
Alignment:
Q  183 actttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    ||||||||||| ||||||| ||||||||| |||||||||||||| ||||    
T  6198903 actttcctatgatgggaaattctttccctcacccaccctaaatgccacc 6198951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 234
Target Start/End: Original strand, 5142514 - 5142605
Alignment:
Q  143 ataagatcaatgttcatcttaaatataatggtcaaaacctactttcctatggtgggaaaatctttcccttacccaccctaaatgtcaccaaa 234  Q
    |||| ||| |||||| |||| ||| |||||| || || |||||||   ||||||| ||| ||||||||| |||||||||||||| |||||||    
T  5142514 ataaaatctatgttcctctttaatctaatggacataatctactttttcatggtggaaaattctttccctcacccaccctaaatgccaccaaa 5142605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 26021913 - 26021959
Alignment:
Q  185 tttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    ||||||||||||||||| |||||||| | ||||||||||||| ||||    
T  26021913 tttcctatggtgggaaactctttccccttcccaccctaaatgccacc 26021959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 5504407 - 5504342
Alignment:
Q  168 taatggtcaaaacctactttcctatggtgggaaaatctttcccttacccaccctaaatgtcaccaa 233  Q
    ||||||||||||   ||||| |||| |||||||| |||||||| | ||||||||||||| ||||||    
T  5504407 taatggtcaaaaatcacttttctatagtgggaaactctttccccttcccaccctaaatgccaccaa 5504342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 9371844 - 9371884
Alignment:
Q  185 tttcctatggtgggaaaatctttcccttacccaccctaaat 225  Q
    |||||||||||||||||||||||||| | |||||| |||||    
T  9371844 tttcctatggtgggaaaatctttcccgttcccaccttaaat 9371884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 30901432 - 30901384
Alignment:
Q  183 actttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    ||||||||||||| ||||| |||| |||| |||||||||||||| ||||    
T  30901432 actttcctatggtaggaaactcttgccctcacccaccctaaatgccacc 30901384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 8e-38; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 5101023 - 5100943
Alignment:
Q  33 tgtagagtttgttggaacttggaaccatggtttctgaaaaaaggcacacacatagacaagataacggtggtagaagaaagt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5101023 tgtagagtttgttggaacttggaaccatggtttctgaaaaaaggcacacacatagacaagataacggtggtagaagaaagt 5100943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 133 - 233
Target Start/End: Complemental strand, 4530291 - 4530191
Alignment:
Q  133 agagactatcataagatcaatgttcatcttaaatataatggtcaaaacctactttcctatggtgggaaaatctttcccttacccaccctaaatgtcacca 232  Q
    ||||||||| ||| ||||||||||  | || ||| ||||||| |||| ||||||| ||||| ||||||| ||||||||| |||||||||||||| |||||    
T  4530291 agagactataatatgatcaatgtttctatttaatctaatggttaaaagctacttttctatgatgggaaattctttccctcacccaccctaaatgccacca 4530192  T
Q  233 a 233  Q
    |    
T  4530191 a 4530191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 158 - 231
Target Start/End: Original strand, 5101826 - 5101899
Alignment:
Q  158 atcttaaatataatggtcaaaacctactttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    ||||||||| |||||||| ||| ||| ||||| |||||||| || ||||| |||||||||||||||||| ||||    
T  5101826 atcttaaatctaatggtctaaatctattttcccatggtgggtaactctttaccttacccaccctaaatgccacc 5101899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 22425497 - 22425569
Alignment:
Q  159 tcttaaatataatggtcaaaacctactttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    |||| ||| ||||||||| ||  |||||||||||||||||||| ||||||||| ||||| |||||||| ||||    
T  22425497 tctttaatctaatggtcataatatactttcctatggtgggaaattctttccctcacccatcctaaatgccacc 22425569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 45597671 - 45597624
Alignment:
Q  184 ctttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    |||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  45597671 ctttcctatggtgggaaattctttccctcacccaccctaaatgccacc 45597624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 37689907 - 37689965
Alignment:
Q  168 taatggtcaaaacctactttcctatggtgggaaaatctttcccttacccaccctaaatg 226  Q
    |||||||||||| | |||||  |||| ||||||| ||||||||||||||||||||||||    
T  37689907 taatggtcaaaatcaacttttttatgatgggaaactctttcccttacccaccctaaatg 37689965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 22862599 - 22862648
Alignment:
Q  182 tactttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    |||||||||||||||||||| ||||||||| ||||| |||||||| ||||    
T  22862599 tactttcctatggtgggaaattctttccctcacccatcctaaatgccacc 22862648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 13536997 - 13537045
Alignment:
Q  184 ctttcctatggtgggaaaatctttcccttacccaccctaaatgtcacca 232  Q
    |||||| ||||||||||| ||||||||| |||||||||||||| |||||    
T  13536997 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacca 13537045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 5101106 - 5101075
Alignment:
Q  1 tgaaattgaaaaaccatatgtttatagttata 32  Q
    ||||||||||||||||||||||||||||||||    
T  5101106 tgaaattgaaaaaccatatgtttatagttata 5101075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 3788481 - 3788435
Alignment:
Q  185 tttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    ||||||||||||||||| |||||||| | ||||||||||||| ||||    
T  3788481 tttcctatggtgggaaactctttccccttcccaccctaaatgccacc 3788435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 4125417 - 4125466
Alignment:
Q  183 actttcctatggtgggaaaatctttcccttacccaccctaaatgtcacca 232  Q
    |||||||||| |||||||| |||||||| | ||||||||||||| |||||    
T  4125417 actttcctatagtgggaaactctttcccattcccaccctaaatgccacca 4125466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 22424845 - 22424796
Alignment:
Q  182 tactttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    |||||||||||| |||| || ||||||||| |||||||||||||| ||||    
T  22424845 tactttcctatgatggggaattctttccctcacccaccctaaatgccacc 22424796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 15374705 - 15374745
Alignment:
Q  191 atggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    |||||||||||||||||||| | ||||||||||||| ||||    
T  15374705 atggtgggaaaatctttccccttcccaccctaaatgccacc 15374745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 22861923 - 22861879
Alignment:
Q  182 tactttcctatggtgggaaaatctttcccttacccaccctaaatg 226  Q
    |||||||||||| |||| || ||||||||| ||||||||||||||    
T  22861923 tactttcctatgatggggaattctttccctcacccaccctaaatg 22861879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 51129421 - 51129373
Alignment:
Q  183 actttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    ||||||| || |||||||| ||||||||| |||||||||||||| ||||    
T  51129421 actttcccatagtgggaaactctttccctcacccaccctaaatgccacc 51129373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 51132317 - 51132357
Alignment:
Q  191 atggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    ||||||||||| ||||||||| | |||||||||||||||||    
T  51132317 atggtgggaaactctttccctcatccaccctaaatgtcacc 51132357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 123 - 231
Target Start/End: Complemental strand, 510561 - 510453
Alignment:
Q  123 tctagtctgaagagactatcataagatcaatgttcatcttaaatataatggtcaaaacctactttcctatggtgggaaaatctttcccttacccacccta 222  Q
    |||||| || ||||||||| ||||||||| ||||| | || ||| ||||||| |||| ||||||||| ||  |||| || |||||||||||||||| |||    
T  510561 tctagtatggagagactataataagatcagtgttcctatttaatttaatggttaaaaactactttcccataatggggaattctttcccttacccactcta 510462  T
Q  223 aatgtcacc 231  Q
    |||| ||||    
T  510461 aatgccacc 510453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 123 - 231
Target Start/End: Complemental strand, 8491576 - 8491468
Alignment:
Q  123 tctagtctgaagagactatcataagatcaatgttcatcttaaatataatggtcaaaacctactttcctatggtgggaaaatctttcccttacccacccta 222  Q
    |||||| || |||||||||  ||| |||||||||  |||| ||| || ||||  |||  | ||||||||| |||||||||||||||||| ||||||||||    
T  8491576 tctagtgtggagagactatgttaaaatcaatgtttctctttaatctagtggtataaatttgctttcctatagtgggaaaatctttccctcacccacccta 8491477  T
Q  223 aatgtcacc 231  Q
    |||| ||||    
T  8491476 aatgccacc 8491468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 45163117 - 45163165
Alignment:
Q  183 actttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    ||||||||||| ||||||||||||||||| |||||||||||||| ||||    
T  45163117 actttcctatgatgggaaaatctttccctcacccaccctaaatgccacc 45163165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 31694210 - 31694167
Alignment:
Q  183 actttcctatggtgggaaaatctttcccttacccaccctaaatg 226  Q
    |||||||||||||||||||||||| ||| |||||||||||||||    
T  31694210 actttcctatggtgggaaaatcttccccctacccaccctaaatg 31694167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 232
Target Start/End: Original strand, 788484 - 788521
Alignment:
Q  195 tgggaaaatctttcccttacccaccctaaatgtcacca 232  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  788484 tgggaaactctttccctcacccaccctaaatgtcacca 788521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 231
Target Start/End: Original strand, 35886085 - 35886158
Alignment:
Q  158 atcttaaatataatggtcaaaacctactttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    ||||||||| |||||||||||| ||| |||| || ||||||||| |||||||  | || |||||||||| ||||    
T  35886085 atcttaaatctaatggtcaaaaactattttcttacggtgggaaactctttcctattcctaccctaaatgccacc 35886158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 511443 - 511491
Alignment:
Q  183 actttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    ||||||||||| ||||||| ||||||| | |||||||||||||| ||||    
T  511443 actttcctatgatgggaaattctttccttcacccaccctaaatgccacc 511491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 39656914 - 39656962
Alignment:
Q  183 actttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    |||||||||| || ||||| |||||||| ||||||||||||||| ||||    
T  39656914 actttcctatagtaggaaactctttcccctacccaccctaaatgccacc 39656962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 40647167 - 40647227
Alignment:
Q  172 ggtcaaaaccta-ctttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    |||||||| ||| |||||| ||||| |||||||||||| | ||||||||||||||| ||||    
T  40647167 ggtcaaaatctatctttcccatggtaggaaaatctttctcctacccaccctaaatggcacc 40647227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 6353747 - 6353684
Alignment:
Q  168 taatggtcaaaacctactttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    ||||||| ||||  |||||||||||| ||||||||||||||||| |||||||||||||| ||||    
T  6353747 taatggttaaaatttactttcctatgatgggaaaatctttccctcacccaccctaaatgccacc 6353684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 326241 - 326295
Alignment:
Q  143 ataagatcaatgttcatcttaaatataatggtcaaaacctactttcctatggtgg 197  Q
    |||||||||||||||||||||||| ||||||||||||| |||||| | |||||||    
T  326241 ataagatcaatgttcatcttaaatttaatggtcaaaacttacttttccatggtgg 326295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 30003551 - 30003615
Alignment:
Q  168 taatggtcaaaacctactttcctatggtgggaaaatctttcccttacccaccctaaatgtcacca 232  Q
    |||||||||||| | |||||  |||||| ||||| |||||||||||||||||||||||| |||||    
T  30003551 taatggtcaaaatcaacttttttatggtaggaaactctttcccttacccaccctaaatgccacca 30003615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 17591331 - 17591404
Alignment:
Q  130 tgaagagactatcataagatcaatgttcatcttaaatataatgg-tcaaaacctactttcctatggtgggaaaa 202  Q
    |||||||||||| ||||||||||||||| ||||||||  ||||| |||||| | ||||||| ||||||| ||||    
T  17591331 tgaagagactattataagatcaatgttcctcttaaatcaaatggttcaaaaacaactttcccatggtggaaaaa 17591404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 36912939 - 36913012
Alignment:
Q  130 tgaagagactatcataagatcaatgttcatcttaaatataatgg-tcaaaacctactttcctatggtgggaaaa 202  Q
    |||||||||||||||||||||||||||| ||||||||  ||||| |||||| | ||||| | |||||| |||||    
T  36912939 tgaagagactatcataagatcaatgttcctcttaaatcaaatggttcaaaaacaacttttccatggtgagaaaa 36913012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 233
Target Start/End: Original strand, 19855060 - 19855111
Alignment:
Q  182 tactttcctatggtgggaaaatctttcccttacccaccctaaatgtcaccaa 233  Q
    |||||||||||| |||| || ||||||||| |||||||||||||| ||||||    
T  19855060 tactttcctatgatggggaattctttccctcacccaccctaaatgccaccaa 19855111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 30002907 - 30002864
Alignment:
Q  188 cctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    ||||||||||||||||||||||| | ||||||||||||| ||||    
T  30002907 cctatggtgggaaaatctttccccttcccaccctaaatgccacc 30002864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 36912344 - 36912274
Alignment:
Q  130 tgaagagactatcataagatcaatgttcatcttaaatataatgg-tcaaaacctactttcctatggtgggaaaa 202  Q
    ||||||||||||||||||||||||||   ||||||||  ||||| |||||| | ||||||| ||||||||||||    
T  36912344 tgaagagactatcataagatcaatgt---tcttaaatcaaatggttcaaaaacaactttcccatggtgggaaaa 36912274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 6354696 - 6354733
Alignment:
Q  194 gtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  6354696 gtgggaaaatctttccctcacccaccctaaatgccacc 6354733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 17590666 - 17590593
Alignment:
Q  130 tgaagagactatcataagatcaatgttcatcttaaatataatgg-tcaaaacctactttcctatggtgggaaaa 202  Q
    |||||||| ||||||||||||||||||| ||||||||  ||||| |||||| |  |||||| ||||| ||||||    
T  17590666 tgaagagattatcataagatcaatgttcctcttaaatcaaatggttcaaaaacatctttcccatggtaggaaaa 17590593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 19854385 - 19854336
Alignment:
Q  182 tactttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    |||||||||||||||||||| ||||||||| |||||  ||||||| ||||    
T  19854385 tactttcctatggtgggaaattctttccctcacccattctaaatgccacc 19854336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 42310922 - 42310849
Alignment:
Q  158 atcttaaatataatggtcaaaacctactttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    ||||||||| ||||| || ||| ||| |||  |||||||||||| |||||||| | ||||||||||||| ||||    
T  42310922 atcttaaatctaatgatcgaaagctatttttgtatggtgggaaactctttcccattcccaccctaaatgccacc 42310849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 1282967 - 1283015
Alignment:
Q  183 actttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    ||||||| || |||||||| |||||||| | ||||||||||||||||||    
T  1282967 actttcccatagtgggaaactctttcccattcccaccctaaatgtcacc 1283015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 133 - 231
Target Start/End: Complemental strand, 37692942 - 37692844
Alignment:
Q  133 agagactatcataagatcaatgttcatcttaaatataatggtcaaaacctactttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    ||||||||| ||| ||||||||||  | || |||  |||||| |||| ||||||| ||||| ||||||| ||||||||| |||||||||||||| ||||    
T  37692942 agagactataatatgatcaatgtttctatttaatccaatggttaaaagctacttttctatgatgggaaattctttccctcacccaccctaaatgccacc 37692844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 36661734 - 36661685
Alignment:
Q  182 tactttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    |||||||| ||||||||||| ||||||||| |||||||||||||| ||||    
T  36661734 tactttcccatggtgggaaattctttccctcacccaccctaaatgccacc 36661685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 14735458 - 14735422
Alignment:
Q  130 tgaagagactatcataagatcaatgttcatcttaaat 166  Q
    |||||||||||||||||||||||||||| ||||||||    
T  14735458 tgaagagactatcataagatcaatgttcctcttaaat 14735422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 28869774 - 28869822
Alignment:
Q  183 actttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    ||||||||||| ||||||||||||||| | |||||||||||||| ||||    
T  28869774 actttcctatgatgggaaaatctttccatcacccaccctaaatgccacc 28869822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 10200183 - 10200129
Alignment:
Q  143 ataagatcaatgttcatcttaaatataatggtcaaaacctactttcctatggtgg 197  Q
    |||||||||||| || |||||||| ||||||||  ||| ||||||||||||||||    
T  10200183 ataagatcaatgctcctcttaaatctaatggtcgcaacttactttcctatggtgg 10200129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 14736117 - 14736190
Alignment:
Q  130 tgaagagactatcataagatcaatgttcatcttaaatataatgg-tcaaaacctactttcctatggtgggaaaa 202  Q
    |||||||| ||||||||||||||||||| ||||||||  ||||| |||||| |  |||||| ||||| ||||||    
T  14736117 tgaagagattatcataagatcaatgttcctcttaaatcaaatggttcaaaaacatctttcccatggtaggaaaa 14736190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 9378777 - 9378729
Alignment:
Q  183 actttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    ||||||| ||||||| |||||||||||| | ||||||||||||| ||||    
T  9378777 actttcccatggtggaaaaatctttccccttcccaccctaaatgccacc 9378729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 34853334 - 34853382
Alignment:
Q  183 actttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    ||||||||||||||||||| |||| | | ||||||||||||||| ||||    
T  34853334 actttcctatggtgggaaagtcttcctcctacccaccctaaatgccacc 34853382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1657 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1657
Description:

Target: scaffold1657; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 231
Target Start/End: Complemental strand, 1005 - 909
Alignment:
Q  135 agactatcataagatcaatgttcatcttaaatataatggtcaaaacctactttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    ||||||| |||| ||| ||| || |||| ||| |||||| | |||  |||||||| || |||||||||||||||||| | |||||||||||||||||    
T  1005 agactataataaaatctatgctcctctttaatgtaatggcctaaatttactttccaatagtgggaaaatctttccctcatccaccctaaatgtcacc 909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 6841955 - 6842004
Alignment:
Q  182 tactttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    |||||||||||||||||||| ||||||||| ||||| |||||||| ||||    
T  6841955 tactttcctatggtgggaaattctttccctcacccatcctaaatgccacc 6842004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 10359728 - 10359680
Alignment:
Q  183 actttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    ||||| ||||||||||||||||||||||||||||| | |||||| ||||    
T  10359728 acttttctatggtgggaaaatctttcccttacccatcataaatgccacc 10359680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 6841281 - 6841232
Alignment:
Q  182 tactttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    |||||||||||| |||| || ||||||||| |||||||||||||| ||||    
T  6841281 tactttcctatgatggggaattctttccctcacccaccctaaatgccacc 6841232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 1528609 - 1528561
Alignment:
Q  183 actttcctatggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    ||||||| || |||||||| ||||||||| |||||||||||||| ||||    
T  1528609 actttcccatagtgggaaactctttccctcacccaccctaaatgccacc 1528561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 67287 - 67247
Alignment:
Q  191 atggtgggaaaatctttcccttacccaccctaaatgtcacc 231  Q
    |||||||||||||||||||| | ||||||||||||| ||||    
T  67287 atggtgggaaaatctttccccttcccaccctaaatgccacc 67247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University