View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20626_high_21 (Length: 313)
Name: NF20626_high_21
Description: NF20626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20626_high_21 |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 12 - 297
Target Start/End: Complemental strand, 2778789 - 2778507
Alignment:
| Q |
12 |
atgaatgaagaaagaaagcgtgtgcaattgaaagagaaagagtgtccctacactagacagacatagacatagtcatagacaaacaaaacccagaagaaga |
111 |
Q |
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| T |
2778789 |
atgaatgaagaaagaaagcgtgtgcaattgaaagagaaagagtgtccctacactagacagacatagacatagacatagacaaacaaaacccagaagaaga |
2778690 |
T |
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| Q |
112 |
agaagcagcaggtaggtaagttcgtgaagacagttgttaatgttttttctgttctttctgacactatcacttattaaggcacgtcatgtcttcttcatca |
211 |
Q |
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| T |
2778689 |
ag---cagcaggtaggtaagttcgtgaagacagttgttaatgttttttctgttctttctgacactatcacttattaaggcacgtcatgtcttcttcatca |
2778593 |
T |
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| Q |
212 |
aatcgtgcacgcactaccacgtcagttttatcaatttaaagatattactacaaatttctcaaacataaaaatttcataaaaataaa |
297 |
Q |
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|||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||| |||||||||||| | ||||||||| |
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| T |
2778592 |
aatcgtgcacgcactaccacgtcacttttatcaatttataaatattactacaaatttcttcaacataaaaattgctcaaaaataaa |
2778507 |
T |
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