View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20626_high_23 (Length: 301)
Name: NF20626_high_23
Description: NF20626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20626_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 22365250 - 22364971
Alignment:
| Q |
1 |
tacttaaggaacaataaaaagcaccatatccataattccatttgttgctgagtttgcgacatgcttcaattgtgtgtgtttcgttttctttttagtgtgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22365250 |
tacttaaggaacaataaaaagcaccatatccataattccatttgttgctgagtttgcgacatgcttcaattgtgtgtgtttcgttttctttttagtgtgg |
22365151 |
T |
|
| Q |
101 |
cttttacattcttacaatttttccttacgaactaagaacgagagctccacctttttggatatttctcaaagtatactatggtctatagtatcaaactatt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22365150 |
cttttacattcttacaatttttccttacgaactaagaatgagagctccacctttttggatatttctcaaagtatactatggtctatagtatcaaactatt |
22365051 |
T |
|
| Q |
201 |
ttcttgaccattgacattatcaaagnnnnnnngccctttggtttagatatcattgtgttcatattttccatccctttata |
280 |
Q |
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|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22365050 |
ttcttgaccattgacattatcaaagtttttttgccctttggtttagatatcattgtgttcatattttccatccctttata |
22364971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 2788521 - 2788417
Alignment:
| Q |
1 |
tacttaaggaacaataaaaagcaccatatccataattccatttgttgctgagtttgcgacatgcttcaattgtgtgtgtttcgttttctttttagtgtgg |
100 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2788521 |
tacttcaggaacaataaaaggcaccatatccataattccagttgttgctgagtttgcgacatgcttcaattgtgtgtgtttcgttttcttttaagtgtgg |
2788422 |
T |
|
| Q |
101 |
ctttt |
105 |
Q |
| |
|
||||| |
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|
| T |
2788421 |
ctttt |
2788417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 166 - 280
Target Start/End: Complemental strand, 2788415 - 2788301
Alignment:
| Q |
166 |
tcaaagtatactatggtctatagtatcaaactattttcttgaccattgacattatcaaagnnnnnnngccctttggtttagatatcattgtgttcatatt |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2788415 |
tcaaagtatactatggtctatagtatcaaactattttcttggccattgacattatcaaagttcttttgccctttggtttagatatcattgtgttcatatt |
2788316 |
T |
|
| Q |
266 |
ttccatccctttata |
280 |
Q |
| |
|
|| |||||||||||| |
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| T |
2788315 |
tttcatccctttata |
2788301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 218
Target Start/End: Original strand, 9368764 - 9368793
Alignment:
| Q |
189 |
tatcaaactattttcttgaccattgacatt |
218 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
9368764 |
tatcaaactattttcttgaccattgacatt |
9368793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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