View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20626_high_26 (Length: 257)

Name: NF20626_high_26
Description: NF20626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20626_high_26
NF20626_high_26
[»] chr3 (1 HSPs)
chr3 (36-237)||(50557697-50557898)
[»] chr1 (3 HSPs)
chr1 (36-214)||(32518545-32518725)
chr1 (36-127)||(38858647-38858738)
chr1 (140-233)||(50524554-50524647)
[»] chr2 (5 HSPs)
chr2 (36-235)||(10164639-10164844)
chr2 (133-234)||(2472788-2472889)
chr2 (36-121)||(11124510-11124595)
chr2 (133-223)||(11123470-11123560)
chr2 (39-95)||(2472905-2472961)
[»] chr7 (3 HSPs)
chr7 (87-237)||(21869421-21869573)
chr7 (59-234)||(46465864-46466042)
chr7 (169-237)||(41539919-41539987)
[»] chr5 (1 HSPs)
chr5 (90-237)||(8316264-8316423)
[»] chr6 (2 HSPs)
chr6 (146-235)||(24663224-24663314)
chr6 (36-109)||(24663639-24663712)
[»] chr4 (1 HSPs)
chr4 (146-227)||(23038021-23038102)
[»] scaffold0009 (3 HSPs)
scaffold0009 (87-145)||(4744-4804)
scaffold0009 (85-145)||(4134-4196)
scaffold0009 (87-132)||(4553-4598)


Alignment Details
Target: chr3 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 36 - 237
Target Start/End: Complemental strand, 50557898 - 50557697
Alignment:
Q  36 aggaaaatttacaagaagaattcaaataatattatatttctatttcacagtatataaattggtcaactctcaaagttatataatagctgtgcctttaaga 135  Q
    ||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  50557898 aggaaaatttacaagaagaattcaaataatattaggtttctattttacagtatataaattggtcaactctcaaaattatataatagttgtgcctttaaga 50557799  T
Q  136 gtattgaatataattttaattagttggtttgttatttcttatattaattgagataaaataaatggaactgatcaatttattgctccttaaccagtgcccc 235  Q
    |||||||||| ||||||||||| ||||||| |||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||    
T  50557798 gtattgaatacaattttaattaattggtttattatttctcatattaattgagataaaataaatagaattgatcaatttattgctccttatccagtgcccc 50557699  T
Q  236 gg 237  Q
    ||    
T  50557698 gg 50557697  T

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Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 36 - 214
Target Start/End: Original strand, 32518545 - 32518725
Alignment:
Q  36 aggaaaatttacaagaagaattcaaataatattatatttctatttcacagtatataaattggtcaactctcaaagttatataatagctgtgccttta--a 133  Q
    ||||||||| | |||||||| | |||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||  |    
T  32518545 aggaaaattcagaagaagaaattaaataatattatgtttctatttcacaggatataaattggtcaactctcaaaattatataatagttgtgcctttaaga 32518644  T
Q  134 gagtattgaatataattttaattagttggtttgttatttcttatattaattgagataaaataaatggaactgatcaattta 214  Q
    |||||||||||| |||||||||||||| |||| |||||||| |||||||||||||||||||||||| ||||||||||||||    
T  32518645 gagtattgaatacaattttaattagttcgtttattatttctcatattaattgagataaaataaatgaaactgatcaattta 32518725  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 36 - 127
Target Start/End: Original strand, 38858647 - 38858738
Alignment:
Q  36 aggaaaatttacaagaagaattcaaataatattatatttctatttcacagtatataaattggtcaactctcaaagttatataatagctgtgc 127  Q
    ||||||||||| |||||||||| |||||||||||| ||||||||| |||| ||||||||||||||||||||||| ||||||||||| |||||    
T  38858647 aggaaaatttataagaagaattaaaataatattatgtttctattttacaggatataaattggtcaactctcaaaattatataatagttgtgc 38858738  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 140 - 233
Target Start/End: Complemental strand, 50524647 - 50524554
Alignment:
Q  140 tgaatataattttaattagttggtttgttatttcttatattaattgagataaaataaatggaactgatcaatttattgctccttaaccagtgcc 233  Q
    |||||| ||||||||||| || ||||  ||||  | ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  50524647 tgaatacaattttaattaattagtttactattcttcatattaattgagataaaataaatggaactaaacaatttattgctccttaaccagtgcc 50524554  T

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Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 36 - 235
Target Start/End: Original strand, 10164639 - 10164844
Alignment:
Q  36 aggaaaatttacaagaagaattcaaataatattatatttctatttcacagtatataaattggtcaactctcaaagttatataatagctgt---gccttta 132  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||| ||||||||||| |||   |||||||    
T  10164639 aggaaaacttacacgaagaattcaaataatattatatttctatttcacatgatataaattgatcaactctcaaaattatataatagttgttgtgccttta 10164738  T
Q  133 agag--tattgaatataattttaattagttggtttgttatttcttatattaattgagataaaataaatggaactgatcaatttattgctcc-ttaaccag 229  Q
    ||||  |||| |||| ||||||||||| ||||||| |||||||| |||||||||||||||||||||||| || |||||||||||||||||| ||||||||    
T  10164739 agagagtattaaatacaattttaattaattggtttattatttctcatattaattgagataaaataaatgaaaatgatcaatttattgctcctttaaccag 10164838  T
Q  230 tgcccc 235  Q
    ||||||    
T  10164839 tgcccc 10164844  T

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Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 133 - 234
Target Start/End: Complemental strand, 2472889 - 2472788
Alignment:
Q  133 agagtattgaatataattttaattagttggtttgttatttcttatattaattgagataaaataaatggaactgatcaatttattgctccttaaccagtgc 232  Q
    ||||||||||||| ||||||||||| ||||||| |||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  2472889 agagtattgaatacaattttaattaattggtttattatttctcatattaattgagataaaataaatgaaactgatcagtttattgctccttaaccagtgc 2472790  T
Q  233 cc 234  Q
    ||    
T  2472789 cc 2472788  T

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Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 36 - 121
Target Start/End: Complemental strand, 11124595 - 11124510
Alignment:
Q  36 aggaaaatttacaagaagaattcaaataatattatatttctatttcacagtatataaattggtcaactctcaaagttatataatag 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||| |||||||||||    
T  11124595 aggaaaatttacaagaagaattcaaataatattatatttctatttcacaggatattaattgatcaactctcaaaattatataatag 11124510  T

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Target: chr2; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 133 - 223
Target Start/End: Complemental strand, 11123560 - 11123470
Alignment:
Q  133 agagtattgaatataattttaattagttggtttgttatttcttatattaattgagataaaataaatggaactgatcaatttattgctcctt 223  Q
    |||||||| |||| ||||||||||| ||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11123560 agagtattaaatacaattttaattaattggtttattatttctcatattaattgagataaaataaatagaactgatcaatttattgctcctt 11123470  T

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Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 2472961 - 2472905
Alignment:
Q  39 aaaatttacaagaagaattcaaataatattatatttctatttcacagtatataaatt 95  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  2472961 aaaatttacaagaagaattcaaataatattatgtttctatttcacaggatataaatt 2472905  T

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Target: chr7 (Bit Score: 106; Significance: 4e-53; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 87 - 237
Target Start/End: Complemental strand, 21869573 - 21869421
Alignment:
Q  87 atataaattggtcaactctcaaagttatataatagctgtgcctttaagag--tattgaatataattttaattagttggtttgttatttcttatattaatt 184  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||  ||||||||| ||||| ||||||||||||| |||||||| |||||||||    
T  21869573 atataaattggtcaactctcaaaattatataatagttgtgcctttaagagaatattgaatacaatttgaattagttggtttattatttctcatattaatt 21869474  T
Q  185 gagataaaataaatggaactgatcaatttattgctccttaaccagtgccccgg 237  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||| |||||    
T  21869473 gagataaaataaatgaaactgagcaatttattgctccttaaccagtgacccgg 21869421  T

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Target: chr7; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 59 - 234
Target Start/End: Original strand, 46465864 - 46466042
Alignment:
Q  59 aaataatattatatttctatttcacagtatataaattggtcaactctcaaagttatataatagctgtgcctttaa---gagtattgaatataattttaat 155  Q
    |||||||||||||||| |||||||||  |||||||||| |||| ||| ||| ||||||||||| |||| |||| |   |||||||||||| |||||||||    
T  46465864 aaataatattatatttttatttcacacgatataaattgatcaattcttaaaattatataatagttgtgtcttttaagagagtattgaatacaattttaat 46465963  T
Q  156 tagttggtttgttatttcttatattaattgagataaaataaatggaactgatcaatttattgctccttaaccagtgccc 234  Q
    || ||||||| |||||| | ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  46465964 taattggtttattatttttcatattaattgagataaaataaatggaactgaacaatttattgctctttaaccagtgccc 46466042  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 237
Target Start/End: Original strand, 41539919 - 41539987
Alignment:
Q  169 atttcttatattaattgagataaaataaatggaactgatcaatttattgctccttaaccagtgccccgg 237  Q
    |||||| || ||||||||  ||||||||||||||   ||||||||| ||||||||||||||||||||||    
T  41539919 atttctcattttaattgaagtaaaataaatggaatccatcaatttaatgctccttaaccagtgccccgg 41539987  T

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Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 90 - 237
Target Start/End: Original strand, 8316264 - 8316423
Alignment:
Q  90 taaattggtcaactctcaaagttatataatagctgtgccttta--agagtattgaata----------taattttaattagttggtttgttatttcttat 177  Q
    ||||||| |||||||||||| ||||||||||  ||||| ||||  |||||||||||||          |||||||||||||||||||| |||||||| ||    
T  8316264 taaattgatcaactctcaaaattatataataattgtgcttttatgagagtattgaatagaacttatgttaattttaattagttggtttattatttctcat 8316363  T
Q  178 attaattgagataaaataaatggaactgatcaatttattgctccttaaccagtgccccgg 237  Q
    ||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| ||||    
T  8316364 attaattaagataaaataaatgaaacttatcaatttattgctccttaaccagtgctccgg 8316423  T

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Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 146 - 235
Target Start/End: Complemental strand, 24663314 - 24663224
Alignment:
Q  146 taattttaattagttggtttgttatttcttatattaattgagataaaataaatggaactgatcaatttattgctcc-ttaaccagtgcccc 235  Q
    |||||||||||||||| ||| |||| ||| |||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||    
T  24663314 taattttaattagttgatttattatctctcatattaattgagataaaataaatgaaaatgatcaatttattgctcctttaaccagtgcccc 24663224  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 24663712 - 24663639
Alignment:
Q  36 aggaaaatttacaagaagaattcaaataatattatatttctatttcacagtatataaattggtcaactctcaaa 109  Q
    ||||||||| | |||||||| |||   |||||||| |||||| |||| || ||||||||||||||||| |||||    
T  24663712 aggaaaattcaaaagaagaaatcactaaatattatgtttctacttcataggatataaattggtcaactttcaaa 24663639  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 23038021 - 23038102
Alignment:
Q  146 taattttaattagttggtttgttatttcttatattaattgagataaaataaatggaactgatcaatttattgctccttaacc 227  Q
    ||||||||||||||||  || |||||||| |||||||||||| | |||||| ||||||  || |||||||||||||||||||    
T  23038021 taattttaattagttgacttattatttctcatattaattgaggtgaaataagtggaacctattaatttattgctccttaacc 23038102  T

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Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 4804 - 4744
Alignment:
Q  87 atataaattggtcaactctcaaagttatataatagctgtgccttta--agagtattgaata 145  Q
    ||||||||||||||||| ||||| ||||||||||  ||||||||||  |||||||||||||    
T  4804 atataaattggtcaactttcaaaattatataataattgtgcctttatgagagtattgaata 4744  T

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Target: scaffold0009; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 4196 - 4134
Alignment:
Q  85 gtatataaattggtcaactctcaaagttatataatagctgtgccttta--agagtattgaata 145  Q
    ||||||||||||||||||| ||||| ||||||||||  |||| |||||  |||||||||||||    
T  4196 gtatataaattggtcaactttcaaaattatataataattgtgtctttatgagagtattgaata 4134  T

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Target: scaffold0009; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 4553 - 4598
Alignment:
Q  87 atataaattggtcaactctcaaagttatataatagctgtgccttta 132  Q
    ||||||||||||||||| ||||| ||||||||||  ||||||||||    
T  4553 atataaattggtcaactttcaaaattatataataattgtgccttta 4598  T

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