View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20626_high_35 (Length: 230)
Name: NF20626_high_35
Description: NF20626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20626_high_35 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 65 - 227
Target Start/End: Complemental strand, 18157802 - 18157640
Alignment:
| Q |
65 |
gatcaacaggcatctgatacctacaaacaggacaagacccatgaatccctaaccacttctcaatacactttccatgaaacctatgcttacaaggcatctc |
164 |
Q |
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| T |
18157802 |
gatcaacaggcatctgatacctacaaacaggacaagacccatgaatccctaaccacttctcaatacactttccatgaaacctatgcttacaaggcatctc |
18157703 |
T |
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| Q |
165 |
cttcacaaccccaccaacctcaaattcctccaaacaaacaacacactcaccaccatcaccttc |
227 |
Q |
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| T |
18157702 |
cttcacaaccccaccaacctcaaattcctccaaacaaacaacacactcaccaccatcaccttc |
18157640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 66 - 227
Target Start/End: Complemental strand, 18161515 - 18161354
Alignment:
| Q |
66 |
atcaacaggcatctgatacctacaaacaggacaagacccatgaatccctaaccacttctcaatacactttccatgaaacctatgcttacaaggcatctcc |
165 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18161515 |
atcaacaggcatgtgatacctacaaacaggacaagacccatgaatccccaaccacttctcaatacactttccatgaaacctatgcttacaaggcatctcc |
18161416 |
T |
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| Q |
166 |
ttcacaaccccaccaacctcaaattcctccaaacaaacaacacactcaccaccatcaccttc |
227 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| |
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| T |
18161415 |
ttcacaaccccaccaacctcaaactcctccaaacaaacaacacactctcctccatcaccttc |
18161354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 66 - 173
Target Start/End: Complemental strand, 52896848 - 52896741
Alignment:
| Q |
66 |
atcaacaggcatctgatacctacaaacaggacaagacccatgaatccctaaccacttctcaatacactttccatgaaacctatgcttacaaggcatctcc |
165 |
Q |
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||||||| | |||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
52896848 |
atcaacatgtatctgatacctacaaacaaaacaagacctatgaatccccaaccacttctcaatacacttcccatgaaacctatgcttacaaggcatctcc |
52896749 |
T |
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| Q |
166 |
ttcacaac |
173 |
Q |
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|||||||| |
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| T |
52896748 |
ttcacaac |
52896741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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