View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20626_high_36 (Length: 224)
Name: NF20626_high_36
Description: NF20626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20626_high_36 |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 1e-61; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 11380452 - 11380255
Alignment:
| Q |
15 |
tttactttcggttccttgctgatatctctagaaattgatggnnnnnnnnnnn-tcaatagaatattaaaaccgacaaaatctacatggttcgatttgatt |
113 |
Q |
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| T |
11380452 |
tttactttctgttccttgctgatatctctagaaattgatggaaaaaaaagaaatcaatagaatattaaaaccgacaaaatctacatggttcgatttgatt |
11380353 |
T |
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| Q |
114 |
caattttaatcaannnnnnngaagcagaaacaaaccaaactaagctgatgatatacgttttggtttgg-ttaggtgattggatcatctaaaaatataa |
210 |
Q |
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| T |
11380352 |
caattttaatcaatttttttgaagcagaaacaaaccaaactaaactgatgatatacgttttggtttggtttaggtgattggatcatctaaaaatataa |
11380255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 11452530 - 11452338
Alignment:
| Q |
15 |
tttactttcggttccttgctgatatctctagaaattgatggnnnnnnnnnnntcaatagaatattaaaaccgacaaaatctacatggttcgatttgattc |
114 |
Q |
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| T |
11452530 |
tttactttctgttccttgctgatatctctagaaattgattgaaaaaaat---tcaatagaatattcaaaccgacaaaatctacatggttcaattcgattc |
11452434 |
T |
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| Q |
115 |
aattttaatcaannnnnnngaagcagaaacaaaccaaactaagctgatgatatacgttttggtttggtt-aggtgattggatcatctaaaaatataa |
210 |
Q |
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| T |
11452433 |
aattttaatcaatttttt-gaagtagaaacaaaccaaactaaactgatgatataggttttggtttggttcgggtgattggatcatctaaaaatataa |
11452338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 67 - 210
Target Start/End: Complemental strand, 11403672 - 11403528
Alignment:
| Q |
67 |
tcaatagaatattaaaaccgacaaaatctacatggttcgatttgattcaattttaatcaannnnnnngaagcagaaacaaaccaaactaagctgatgata |
166 |
Q |
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| T |
11403672 |
tcaatagaatgtacaaaccgacaaaatctacatggttcaatttgattcaattttaattaatttttttgaagtagaaacaaaccaaactaaactgatgata |
11403573 |
T |
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| Q |
167 |
tacgttttggtttggttag-gtgattggatcatctaaaaatataa |
210 |
Q |
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| T |
11403572 |
taggttttggtttcgttcgagtgattggatcatctaaaaatataa |
11403528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 11382351 - 11382314
Alignment:
| Q |
67 |
tcaatagaatattaaaaccgacaaaatctacatggttc |
104 |
Q |
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| T |
11382351 |
tcaatagaatgttcaaaccgacaaaatctacatggttc |
11382314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 75 - 179
Target Start/End: Complemental strand, 35400900 - 35400797
Alignment:
| Q |
75 |
atattaaaaccgacaaaatctacatggttcgatttgattcaattttaatcaannnnnnngaagcagaaacaaaccaaactaagctgatgatatacgtttt |
174 |
Q |
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||||| ||||| |||||||||||||||||| ||||||||||||||| ||||| |||| |||||||||||| ||||| ||||||||||||| ||| |
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| T |
35400900 |
atattcaaacctacaaaatctacatggttcaatttgattcaattttcatcaa-ttttttgaagtagaaacaaaccagactaaactgatgatatacgcttt |
35400802 |
T |
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| Q |
175 |
ggttt |
179 |
Q |
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||||| |
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| T |
35400801 |
ggttt |
35400797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 35400960 - 35400921
Alignment:
| Q |
15 |
tttactttcggttccttgctgatatctctagaaattgatg |
54 |
Q |
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| T |
35400960 |
tttactttctgttccgtgctgatatctctagaaattgatg |
35400921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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