View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20626_high_5 (Length: 524)
Name: NF20626_high_5
Description: NF20626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20626_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 337 - 442
Target Start/End: Original strand, 501739 - 501844
Alignment:
| Q |
337 |
attgacagttagtacaacacaaatttggaatggctcacattcacaaatatacttgctcaatcagagttttgaccaattaccatgttataatatcaacaca |
436 |
Q |
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| T |
501739 |
attgacagttagtacaacagaaatttggaatggctcacattcacaaatatacttgctcaatgtgagttttgaccaattaccatgttataatatcaacaca |
501838 |
T |
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| Q |
437 |
aatttt |
442 |
Q |
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|||||| |
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| T |
501839 |
aatttt |
501844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 437 - 514
Target Start/End: Original strand, 501862 - 501939
Alignment:
| Q |
437 |
aattttgtgttacattgcataccatttcattggaagagaaacaagagaagtggaaacttcataaggacattgtctctg |
514 |
Q |
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| T |
501862 |
aattttgtgttacattccataccatttcattggaagagaaacaagagaagtggaaacttcataaggacattgtctctg |
501939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 501668 - 501713
Alignment:
| Q |
222 |
tttccctttgatttgatttagacttaatatcaccatttccaatcat |
267 |
Q |
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| T |
501668 |
tttccctttgatttgatttaaacttaatatcaccatttccaatcat |
501713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 158
Target Start/End: Original strand, 501639 - 501673
Alignment:
| Q |
124 |
aaatgtaaaaaacaagaattacaaaataatttccc |
158 |
Q |
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| T |
501639 |
aaatgtaaaaaacaagaattacaaaataatttccc |
501673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 127
Target Start/End: Original strand, 501535 - 501566
Alignment:
| Q |
96 |
tagctcaaggtgacaagtttgaaatacaaaat |
127 |
Q |
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| T |
501535 |
tagctcaaggtgacaagtttgaaatacaaaat |
501566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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