View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20626_high_6 (Length: 523)
Name: NF20626_high_6
Description: NF20626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20626_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 1 - 517
Target Start/End: Complemental strand, 4419177 - 4418660
Alignment:
| Q |
1 |
aagttgattagttttagattagaaaatctgccaaccaaatgtgtccaatttgttgnnnnnnntccaaggagctagaaaggatcaagtgtcatcttagtcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4419177 |
aagttgattagttttagattagaaaatctgccaaccaaatgtgtccaatttgttgaaaaaaatccaaggagctagaaaggatcaagtgtcatcttagtcc |
4419078 |
T |
|
| Q |
101 |
atgccttaatgaattgaagaggctactaaatactaatcaaactttccttttcgtacactggtactggtctttggtcactggttccttgctgtataccact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4419077 |
atgccttaatgaattgaagaggctactaaatactaatcaaactttccttttcgtacactggtactggtctttggtcactggttccttgctgtataccact |
4418978 |
T |
|
| Q |
201 |
atacctaataattttctcagtctctgcaaaggtgttactacattttacaagttacggataatgaaatttcttctacaagaaaaa-cttcaatacaaatat |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4418977 |
atacctaataattttctcagtctctgcaaaggtgttactacattttacaagttacggataatgaaatttcttctacaagaaaaaacttcaatacaaatat |
4418878 |
T |
|
| Q |
300 |
tattttctctgcaattagtccgtaaatgttcatagaaaaggataccaaaatgagatacagctagttacccacctaacaggaaagaacggatgtattgaaa |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
4418877 |
tattttctctgcaattagtccgtaaatgttcatagaaaaggataccaaaatgagatacagctagctacccacctaacaggaaagaacggatctattgaaa |
4418778 |
T |
|
| Q |
400 |
acaaagttgtactatagatttttctatttacaccccccttggtgtgatatgagtaccctattaatcaaagcatatccatgtcgttgtgattttagaaatc |
499 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4418777 |
acaaagttgtactatagatttttctatttacaccccccttggtgtgatatgagtaccctattaatcaaagcatatccatgtcgttgtgattttagaaatc |
4418678 |
T |
|
| Q |
500 |
ttttttgccctatgcttc |
517 |
Q |
| |
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|||||||||| ||||||| |
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| T |
4418677 |
ttttttgcccaatgcttc |
4418660 |
T |
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