View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20626_high_9 (Length: 479)
Name: NF20626_high_9
Description: NF20626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20626_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 12 - 464
Target Start/End: Complemental strand, 44347172 - 44346718
Alignment:
| Q |
12 |
cgaagaatatgtgtataattatcatgtaataaaaggttatttgtttcgaaactatttaataaaaggatcccaacaaaggataatctaagtcgtcgtggtg |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44347172 |
cgaaaaatatgtgtataattatcatgtaataaaaggttatttgttttgaaactatttaataaaaggatcccaacaaaggataatctaagtcgtcgtggtg |
44347073 |
T |
|
| Q |
112 |
tggggcttctgattcgttacattgttcgggaggacatggtaaggaggaggaaacaattaatcatctatttgttggttgtgacttctttggtagcgttgat |
211 |
Q |
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| T |
44347072 |
tggggcttctgattcgttacattgttcgggaggacatggtaaggaggaggaaacaattaatcatctatttgttggttgtgacttctttggtagtgttgat |
44346973 |
T |
|
| Q |
212 |
ggcgcgcttttgttcgggaaggaaatcagctcttgtcttcgagtaatctagatgtcctgtatcttggttatttgaaaagaacgtagtgcaagaattttta |
311 |
Q |
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| T |
44346972 |
ggtgcgcttttgttcgggaaggaaatcagctcttgtcttcgagtaatctagatgtcctgtatcttggttatttgaaaagaacgtagtgcaagaattttta |
44346873 |
T |
|
| Q |
312 |
atattagagatctttggatgaagcagttacttataaaagctttgttcttagtggtg--nnnnnnnnnnnnnngaaacagcttatattattaatcaccaaa |
409 |
Q |
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| T |
44346872 |
atattagagatctttggatgaagcagttacttataaaagctttgttcttagtagtggtttttttttttttttgaaacagcttatattattaatcaccaaa |
44346773 |
T |
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| Q |
410 |
ttatacaagcagtacagttacaaggcgataaccaaagagccaaaacagaaaaaag |
464 |
Q |
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| T |
44346772 |
ttatacaagcagtacagttacaaggcgataaccaaagagccaaaacagaaaaaag |
44346718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 462
Target Start/End: Complemental strand, 48888522 - 48888451
Alignment:
| Q |
390 |
ttatattattaatcaccaaattatacaagcagtacagttacaaggcgataaccaaagagccaaaacagaaaaa |
462 |
Q |
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| T |
48888522 |
ttatattattaa-caccaaattatacaagaggtacaattacaaggcgacggctaaaacgccaaaacagaaaaa |
48888451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 383 - 464
Target Start/End: Complemental strand, 55353892 - 55353811
Alignment:
| Q |
383 |
aaacagcttatattattaatcaccaaattatacaagcagtacagttacaaggcgataaccaaagagccaaaacagaaaaaag |
464 |
Q |
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| T |
55353892 |
aaacagcttatattattaaacaccaaattatacaagcagtacaattacaaggcgatggccaaagaaccaaaacagaaaaaag |
55353811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 36281727 - 36281683
Alignment:
| Q |
159 |
aggaaacaattaatcatctatttgttggttgtgacttctttggta |
203 |
Q |
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| T |
36281727 |
aggaaacaattaatcatctatttcttggatatgacttctttggta |
36281683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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