View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20626_low_1 (Length: 715)

Name: NF20626_low_1
Description: NF20626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20626_low_1
NF20626_low_1
[»] chr6 (10 HSPs)
chr6 (31-706)||(34633663-34634323)
chr6 (106-234)||(32034336-32034464)
chr6 (102-174)||(12783897-12783969)
chr6 (105-182)||(29061323-29061400)
chr6 (105-172)||(29065791-29065858)
chr6 (105-172)||(29074804-29074871)
chr6 (105-172)||(29079568-29079635)
chr6 (105-172)||(29107377-29107444)
chr6 (109-174)||(13401547-13401612)
chr6 (102-154)||(17596756-17596808)
[»] chr2 (14 HSPs)
chr2 (259-706)||(26857640-26858086)
chr2 (102-174)||(2920456-2920528)
chr2 (102-174)||(24512228-24512300)
chr2 (31-173)||(26858175-26858313)
chr2 (102-174)||(41500174-41500246)
chr2 (102-173)||(40679537-40679608)
chr2 (102-174)||(2648178-2648250)
chr2 (102-174)||(43491170-43491242)
chr2 (102-213)||(28472108-28472224)
chr2 (105-176)||(29093774-29093842)
chr2 (102-174)||(10365732-10365804)
chr2 (107-162)||(16580559-16580614)
chr2 (105-174)||(39393098-39393167)
chr2 (105-163)||(34638212-34638267)
[»] chr4 (17 HSPs)
chr4 (102-181)||(34154368-34154447)
chr4 (102-207)||(51429269-51429374)
chr4 (105-180)||(34530738-34530813)
chr4 (105-178)||(39588123-39588196)
chr4 (105-174)||(56138313-56138382)
chr4 (102-174)||(44561270-44561342)
chr4 (102-181)||(6283407-6283486)
chr4 (107-180)||(56304905-56304978)
chr4 (106-174)||(958538-958606)
chr4 (106-176)||(42885508-42885580)
chr4 (102-176)||(243285-243359)
chr4 (102-163)||(28081530-28081592)
chr4 (105-174)||(1041996-1042065)
chr4 (145-184)||(37865193-37865232)
chr4 (159-234)||(48806460-48806535)
chr4 (159-234)||(38368206-38368278)
chr4 (102-174)||(55793981-55794057)
[»] chr8 (13 HSPs)
chr8 (102-176)||(18441381-18441455)
chr8 (102-177)||(3395924-3395999)
chr8 (105-181)||(22547497-22547573)
chr8 (102-174)||(41858063-41858135)
chr8 (105-174)||(26451541-26451610)
chr8 (105-174)||(41274653-41274722)
chr8 (102-180)||(37779707-37779783)
chr8 (105-169)||(24860448-24860512)
chr8 (106-174)||(42602521-42602589)
chr8 (138-177)||(38871831-38871870)
chr8 (159-234)||(40740881-40740956)
chr8 (165-234)||(7120875-7120944)
chr8 (32-65)||(22547540-22547573)
[»] chr1 (23 HSPs)
chr1 (102-184)||(14174851-14174933)
chr1 (105-181)||(27487609-27487685)
chr1 (103-174)||(42572698-42572769)
chr1 (105-174)||(29763162-29763231)
chr1 (102-233)||(26637196-26637336)
chr1 (105-177)||(44596893-44596965)
chr1 (102-181)||(49426741-49426821)
chr1 (106-175)||(13147556-13147625)
chr1 (105-234)||(4208371-4208511)
chr1 (102-163)||(13972134-13972195)
chr1 (105-174)||(49927444-49927513)
chr1 (102-174)||(6434809-6434881)
chr1 (102-180)||(35526975-35527057)
chr1 (102-163)||(36908642-36908707)
chr1 (107-174)||(29435034-29435100)
chr1 (106-160)||(29709255-29709309)
chr1 (124-174)||(49395664-49395714)
chr1 (105-163)||(51269010-51269068)
chr1 (165-234)||(49395578-49395647)
chr1 (102-148)||(41779766-41779812)
chr1 (32-73)||(4208470-4208511)
chr1 (159-212)||(7942971-7943024)
chr1 (102-174)||(19159684-19159760)
[»] chr7 (15 HSPs)
chr7 (102-181)||(21188366-21188445)
chr7 (102-174)||(46863284-46863356)
chr7 (105-174)||(30355182-30355251)
chr7 (102-174)||(41047838-41047910)
chr7 (107-181)||(34139925-34139999)
chr7 (102-172)||(42682057-42682127)
chr7 (102-174)||(17838711-17838784)
chr7 (102-163)||(48269713-48269774)
chr7 (103-174)||(28115473-28115544)
chr7 (106-174)||(36394882-36394950)
chr7 (107-174)||(28980117-28980184)
chr7 (105-174)||(40587722-40587791)
chr7 (105-174)||(43686850-43686919)
chr7 (105-169)||(45364163-45364227)
chr7 (167-234)||(12080396-12080460)
[»] chr3 (27 HSPs)
chr3 (102-184)||(19454291-19454373)
chr3 (102-174)||(52570506-52570578)
chr3 (107-174)||(34694379-34694446)
chr3 (105-174)||(51696517-51696586)
chr3 (105-174)||(55207606-55207675)
chr3 (102-174)||(43568927-43568999)
chr3 (102-174)||(45101788-45101860)
chr3 (102-174)||(51402338-51402410)
chr3 (102-174)||(2271252-2271325)
chr3 (102-174)||(36134384-36134457)
chr3 (105-174)||(41803059-41803128)
chr3 (105-174)||(43476253-43476322)
chr3 (105-174)||(55385198-55385267)
chr3 (104-172)||(7245155-7245223)
chr3 (102-170)||(41577140-41577208)
chr3 (102-172)||(4004742-4004813)
chr3 (105-163)||(41137780-41137838)
chr3 (105-174)||(49609444-49609513)
chr3 (107-174)||(13896821-13896888)
chr3 (102-160)||(2426559-2426617)
chr3 (109-174)||(24703359-24703427)
chr3 (105-163)||(49219734-49219792)
chr3 (107-176)||(34648147-34648218)
chr3 (102-181)||(46402410-46402493)
chr3 (167-234)||(32593143-32593210)
chr3 (102-160)||(46347661-46347719)
chr3 (32-65)||(41137805-41137838)
[»] chr5 (12 HSPs)
chr5 (102-174)||(18307315-18307387)
chr5 (102-174)||(35564322-35564394)
chr5 (102-177)||(42865744-42865819)
chr5 (105-174)||(542733-542802)
chr5 (102-174)||(25497572-25497644)
chr5 (102-174)||(11346068-11346141)
chr5 (105-174)||(3600398-3600467)
chr5 (106-174)||(8537226-8537295)
chr5 (102-150)||(1401380-1401428)
chr5 (124-174)||(20192414-20192464)
chr5 (160-234)||(35564236-35564310)
chr5 (102-213)||(8576906-8577022)
[»] scaffold0199 (1 HSPs)
scaffold0199 (102-174)||(12327-12400)
[»] scaffold0192 (1 HSPs)
scaffold0192 (102-174)||(18839-18911)
[»] scaffold0176 (1 HSPs)
scaffold0176 (107-181)||(850-924)


Alignment Details
Target: chr6 (Bit Score: 420; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 31 - 706
Target Start/End: Complemental strand, 34634323 - 34633663
Alignment:
Q  31 ggaagatgaaatgaataattgatgagagagcttctagtagattgtgagagagatttgaaagnnnnnnnnnnttggaagatgagatgaataatggatgaaa 130  Q
    ||||||||| || |||||| |||||||||||||||  ||||||||||||||||||||||||          ||||||||||| |||||||||||||||||    
T  34634323 ggaagatgagataaataatggatgagagagcttctgctagattgtgagagagatttgaaagaaaaaaaaaattggaagatgaaatgaataatggatgaaa 34634224  T
Q  131 gagtttttgccagatttgtagcagaagatcctctgcagttaactgcagccgattccttcaaaatttggcagctaactaccgaatgatatttggataaatt 230  Q
    ||  ||           ||||||||||||||||  ||||||||||||  ||||||||||||||||             |||||  |||||||||||||||    
T  34634223 gatctt-----------gtagcagaagatcctcgacagttaactgcaatcgattccttcaaaatt-------------ccgaagaatatttggataaatt 34634148  T
Q  231 actcat-------agac--caaatcaaatgtatcagcaacaattttcacatcaaaatgagtggaaagagtnnnnnnnngttaccgagccatcatcatcga 321  Q
    |||| |       || |  |||||||||| ||||| ||||||||||||||||||||| ||||||||||||        ||||  || |||||||||||||    
T  34634147 actcctgtttctcagccgccaaatcaaatctatcaacaacaattttcacatcaaaatcagtggaaagagtaaaaaaaagttagtgacccatcatcatcga 34634048  T
Q  322 ctcttcaacttcgtatagccaagaggaaaaattcacgcatatatataacaccaaacccacccgctaacaaaacaattttggcgctcacattttacaacct 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34634047 ctcttcaacttcgtatagccaagaggaaaaattcacgcatatatataacaccaaacccacccgctaacaaaacaattttggcgctcacattttacaacct 34633948  T
Q  422 ctcaacttccttctctccctaacagaaaatgaatcgccaaccgcaaccaccaccaccttccaccgcacgcgcgcgttgcgccggttgccggacctacttc 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34633947 ctcaacttccttctctccctaacagaaaatgaatcgccaaccgcaaccaccaccaccttccaccgcacgcgcgcgttgcgccggttgccggacctacttc 34633848  T
Q  522 tccgccgcgcaaggtgtggcggagttaccttgtccgaactgtcaaatgccgcatgtgttcttcgttgactcttccgcagtgaaaatccggtgttcttcgt 621  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34633847 tccgccgcgcaaggtgtggcggagttaccttgtccgaactgtcaaatgccgcatgtgttcttcgttgactcttccgcagtgaaaatccggtgttcttcgt 34633748  T
Q  622 gtaaggcggttgtgaatgctccaagtaatctttcgaagtttccgtgtccgcaatgtcatgtgaggattgatgttcatgatgatgt 706  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34633747 gtaaggcggttgtgaatgctccaagtaatctttcgaagtttccgtgtccgcaatgtcatgtgaggattgatgttcatgctgatgt 34633663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 106 - 234
Target Start/End: Original strand, 32034336 - 32034464
Alignment:
Q  106 aagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgcagccgattccttcaaaatttggcagctaa 205  Q
    ||||||||| ||||||||||| | |||  || ||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||| ||| |||    
T  32034336 aagatgagacgaataatggataagagatcttctgccagatttgtagcagaagatcatcggcagttaactgcagccggttccttcaaaatttgtcagttaa 32034435  T
Q  206 ctaccgaatgatatttggataaattactc 234  Q
    || ||||| | |||||| |||||||||||    
T  32034436 ctgccgaagggtatttgaataaattactc 32034464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 12783897 - 12783969
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    ||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||| ||||||||||    
T  12783897 ttggaagatgagatgaataatggatgagagagctttttccagatttgtagcagaagatcctcggcagttaact 12783969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 105 - 182
Target Start/End: Complemental strand, 29061400 - 29061323
Alignment:
Q  105 gaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgcagccga 182  Q
    |||||||||||||||||||||||| |||| || | |||||||||||||||||||||||| | ||||||||||||||||    
T  29061400 gaagatgagatgaataatggatgagagagcttctaccagatttgtagcagaagatcctcggaagttaactgcagccga 29061323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 29065858 - 29065791
Alignment:
Q  105 gaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaa 172  Q
    |||||||||||||||||||||||| |||| ||  |||||||||||||||||||||||||  |||||||    
T  29065858 gaagatgagatgaataatggatgagagagcttccgccagatttgtagcagaagatcctcgacagttaa 29065791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 29074871 - 29074804
Alignment:
Q  105 gaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaa 172  Q
    |||||||||||||||||||||||| |||| ||  |||||||||||||||||||||||||  |||||||    
T  29074871 gaagatgagatgaataatggatgagagagcttccgccagatttgtagcagaagatcctcgacagttaa 29074804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 29079635 - 29079568
Alignment:
Q  105 gaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaa 172  Q
    |||||||||||||||||||||||| |||| ||  |||||||||||||||||||||||||  |||||||    
T  29079635 gaagatgagatgaataatggatgagagagcttccgccagatttgtagcagaagatcctcgacagttaa 29079568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 29107444 - 29107377
Alignment:
Q  105 gaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaa 172  Q
    |||||||||||||||||||||||| |||| ||  |||||||||||||||||||||||||  |||||||    
T  29107444 gaagatgagatgaataatggatgagagagcttccgccagatttgtagcagaagatcctcgacagttaa 29107377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 109 - 174
Target Start/End: Complemental strand, 13401612 - 13401547
Alignment:
Q  109 atgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    |||||||||||||||||||| |||| || || || |||||||||||||||||||| | ||||||||    
T  13401612 atgagatgaataatggatgagagagcttctgtcatatttgtagcagaagatcctcggtagttaact 13401547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 17596756 - 17596808
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcag 154  Q
    ||||||||||||||||||||||||||| | || || |||||||||| ||||||    
T  17596756 ttggaagatgagatgaataatggatgagatagcttctgccagatttatagcag 17596808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 259 - 706
Target Start/End: Complemental strand, 26858086 - 26857640
Alignment:
Q  259 aacaattttcacatcaaaatgagtggaaagagtnnnnnnnngttaccgagccatcatcatcgactcttcaacttcgtatagccaagaggaaaaattcacg 358  Q
    ||||||||||||||||||||||||| |||||||        ||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26858086 aacaattttcacatcaaaatgagtgaaaagagtaaaaaaaagttactga-ccatcatcatcgactcttcaacttcgtatagccaagaggaaaacttcacg 26857988  T
Q  359 catatatataacaccaaacccacccgctaacaaaacaattttggcgctcacattttacaacctctcaacttccttctctccctaacagaaaatgaatcgc 458  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26857987 catatatataacaccaaacccacccgctaacaaaacaattttggcgctcacattttacaacctctcaacttccttctctccctaacagaaaatgaatcgc 26857888  T
Q  459 caaccgcaaccaccaccaccttccaccgcacgcgcgcgttgcgccggttgccggacctacttctccgccgcgcaaggtgtggcggagttaccttgtccga 558  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26857887 caaccgcaaccaccaccaccttccaccgcacgcgcgcgttgcgccggttgccgggcctacttctccgccgcgcaaggtgtggcggagttaccttgtccga 26857788  T
Q  559 actgtcaaatgccgcatgtgttcttcgttgactcttccgcagtgaaaatccggtgttcttcgtgtaaggcggttgtgaatgctccaagtaatctttcgaa 658  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26857787 actgtcaaatgccgcatgtgttcttcgttgactcttccgcagtgaaaatccggtgttcttcgtgtaaggcggttgtgaatgctccaagtaatctttcgaa 26857688  T
Q  659 gtttccgtgtccgcaatgtcatgtgaggattgatgttcatgatgatgt 706  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26857687 gtttccgtgtccgcaatgtcatgtgaggattgatgttcatgctgatgt 26857640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 2920456 - 2920528
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    ||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||| ||||||||||    
T  2920456 ttggaagatgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 2920528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 24512300 - 24512228
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    ||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||| ||||||||||    
T  24512300 ttggaagatgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 24512228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 31 - 173
Target Start/End: Complemental strand, 26858313 - 26858175
Alignment:
Q  31 ggaagatgaaatgaataattgatgagagagcttctagtagattgtgagagagatttgaaagnnnnnnnnnnttggaagatgagatgaataatggatgaaa 130  Q
    ||||||||| ||||||||| ||| ||||| |||||  |||||||||||||||||||||||           ||||||||||||||||||||| ||||| |    
T  26858313 ggaagatgagatgaataatggataagagaacttctgctagattgtgagagagatttgaaa----aaacaaattggaagatgagatgaataattgatgaga 26858218  T
Q  131 gagtttttgccagatttgtagcagaagatcctctgcagttaac 173  Q
    || ||| || || |||||||||||||||||||| |||||||||    
T  26858217 gaatttctgtcacatttgtagcagaagatcctcggcagttaac 26858175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 41500174 - 41500246
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    ||||||||| ||||||||||||||||| |||| || |||||||||||||||||||||||||| ||||||||||    
T  41500174 ttggaagataagatgaataatggatgagagagcttatgccagatttgtagcagaagatcctcggcagttaact 41500246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 102 - 173
Target Start/End: Original strand, 40679537 - 40679608
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaac 173  Q
    ||||||||||||||||||||||||||| |||| || | |||||||||||||||||||||||| |||||||||    
T  40679537 ttggaagatgagatgaataatggatgagagaggttcttccagatttgtagcagaagatcctcggcagttaac 40679608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 2648250 - 2648178
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    ||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||| || ||| ||||||    
T  2648250 ttggaagatgagatgaataattgatgagagagtttctgccagatttgtagcagaagatcatcggcaattaact 2648178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 43491242 - 43491170
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    ||||||||||||||||||||||||||| |||| || |||||||||| || |||||||| ||| ||||||||||    
T  43491242 ttggaagatgagatgaataatggatgagagagcttctgccagatttataacagaagattctcggcagttaact 43491170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 213
Target Start/End: Complemental strand, 28472224 - 28472108
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaag-agtttttgccagattt-gtag--cagaagatcctctgcagttaactgcagccgattccttcaaaattt- 196  Q
    ||||||||| ||||||||||||||||| || || || |||||||||| ||||  |||||||||||| |||||||||||||||||  |  ||||||||||     
T  28472224 ttggaagataagatgaataatggatgagaggagattctgccagattttgtagtgcagaagatcctcagcagttaactgcagccggatttttcaaaatttc 28472125  T
Q  197 ggcagctaactaccgaa 213  Q
    ||||| |||||||||||    
T  28472124 ggcagttaactaccgaa 28472108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 176
Target Start/End: Original strand, 29093774 - 29093842
Alignment:
Q  105 gaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgc 176  Q
    ||||||||||||||||||   ||| |||| || |||||||||||||||||||||||||| ||||||||||||    
T  29093774 gaagatgagatgaataat---tgagagagcttctgccagatttgtagcagaagatcctcggcagttaactgc 29093842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 10365732 - 10365804
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    ||||||||| ||| ||||||||||||| |||| || |||||||||||||||| ||||||||| ||| ||||||    
T  10365732 ttggaagattagaagaataatggatgagagagcttatgccagatttgtagcaaaagatcctcggcatttaact 10365804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 162
Target Start/End: Complemental strand, 16580614 - 16580559
Alignment:
Q  107 agatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcct 162  Q
    |||||||||||||||||||||| |||  |||||||||||||||||||||| |||||    
T  16580614 agatgagatgaataatggatgagagaacttttgccagatttgtagcagaaaatcct 16580559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 39393167 - 39393098
Alignment:
Q  105 gaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    |||||||||||||||||||||||| |||| || |  ||||||||||| |||||||||||  |||||||||    
T  39393167 gaagatgagatgaataatggatgagagagcttctatcagatttgtagtagaagatcctcgacagttaact 39393098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 34638267 - 34638212
Alignment:
Q  105 gaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctc 163  Q
    |||||||||||||||||||||||| |||| ||   | ||||||||||||||||||||||    
T  34638267 gaagatgagatgaataatggatgagagagctt---ctagatttgtagcagaagatcctc 34638212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 34154368 - 34154447
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgcagccg 181  Q
    ||||||||||||||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  34154368 ttggaagatgagatgaataatagatgagagagcttctgccagatttgtagcagaagatcctctgcagttaactgcagccg 34154447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 102 - 207
Target Start/End: Original strand, 51429269 - 51429374
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgcagccgattccttcaaaatttggcag 201  Q
    ||||||||||||||||||||||||||| |||| || | ||||||||||||||||||||||||  |||||||||||||||| || || ||||||| |||||    
T  51429269 ttggaagatgagatgaataatggatgagagagcttcttccagatttgtagcagaagatcctcgacagttaactgcagccggtttctccaaaattcggcag 51429368  T
Q  202 ctaact 207  Q
     |||||    
T  51429369 ttaact 51429374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 105 - 180
Target Start/End: Original strand, 34530738 - 34530813
Alignment:
Q  105 gaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgcagcc 180  Q
    |||||||||||||||||||||||| |||| || ||||| |||||||||||||||||||| ||||||||||||||||    
T  34530738 gaagatgagatgaataatggatgagagagcttctgccaaatttgtagcagaagatcctcggcagttaactgcagcc 34530813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 105 - 178
Target Start/End: Complemental strand, 39588196 - 39588123
Alignment:
Q  105 gaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgcag 178  Q
    |||||||||||||||||||||||| |||| || ||||| |||||||||||||||||||| ||||||||||||||    
T  39588196 gaagatgagatgaataatggatgagagagcttctgccatatttgtagcagaagatcctcggcagttaactgcag 39588123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 56138382 - 56138313
Alignment:
Q  105 gaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    |||||||||||||||||||||||| |||| || |||||||||||||||||||||||||| ||||||||||    
T  56138382 gaagatgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 56138313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 44561270 - 44561342
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    ||||||||||||||||||||||||||| |||| || |||||||||||||||||| ||||||| ||||||||||    
T  44561270 ttggaagatgagatgaataatggatgagagagcttctgccagatttgtagcagacgatcctcggcagttaact 44561342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 6283407 - 6283486
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgcagccg 181  Q
    ||||||||| ||||||||||||||||| |||| ||  |||||||||| |||||||||||||| |||||||||||||||||    
T  6283407 ttggaagataagatgaataatggatgagagagcttcggccagatttgaagcagaagatcctcggcagttaactgcagccg 6283486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 107 - 180
Target Start/End: Complemental strand, 56304978 - 56304905
Alignment:
Q  107 agatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgcagcc 180  Q
    |||||||||||||||||||||| |||| || ||||||||||||||||||| |||||| ||| ||||||||||||    
T  56304978 agatgagatgaataatggatgagagagcttctgccagatttgtagcagaaaatcctcggcaattaactgcagcc 56304905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 958538 - 958606
Alignment:
Q  106 aagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    ||||||||| ||||||||||||| |||| || |||| ||||||||||||||||||||| ||||||||||    
T  958538 aagatgagaagaataatggatgagagagcttctgccggatttgtagcagaagatcctcggcagttaact 958606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 176
Target Start/End: Complemental strand, 42885580 - 42885508
Alignment:
Q  106 aagatgagatgaataatggatgaaagagtttttgccaga--tttgtagcagaagatcctctgcagttaactgc 176  Q
    ||||||||||||||||||||||| |||| || |||||||  |||||||||||||||| || ||||||||||||    
T  42885580 aagatgagatgaataatggatgagagagcttctgccagatttttgtagcagaagatcatcggcagttaactgc 42885508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 176
Target Start/End: Original strand, 243285 - 243359
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgc 176  Q
    |||||||||| |||||||||||  ||| |||| || ||||||||||||| ||||||||||||  |||||||||||    
T  243285 ttggaagatgcgatgaataatgagtgagagagcttctgccagatttgtaacagaagatcctcgacagttaactgc 243359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 163
Target Start/End: Complemental strand, 28081592 - 28081530
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaag-agtttttgccagatttgtagcagaagatcctc 163  Q
    ||||||||| ||||||||||||||||| || || || ||||||||||||||||||||||||||    
T  28081592 ttggaagataagatgaataatggatgagaggagattctgccagatttgtagcagaagatcctc 28081530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 1042065 - 1041996
Alignment:
Q  105 gaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    |||||||| ||||| |||| |||| |||| || |||||||||||||| ||||||||||| ||||||||||    
T  1042065 gaagatgatatgaacaatgaatgagagagcttatgccagatttgtagtagaagatcctcggcagttaact 1041996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 184
Target Start/End: Complemental strand, 37865232 - 37865193
Alignment:
Q  145 tttgtagcagaagatcctctgcagttaactgcagccgatt 184  Q
    ||||||||||||||||||| ||||||||||||| ||||||    
T  37865232 tttgtagcagaagatcctcggcagttaactgcaaccgatt 37865193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 48806535 - 48806460
Alignment:
Q  159 tcctctgcagttaactgcagccgattccttcaaaatttggcagctaactaccgaatgatatttggataaattactc 234  Q
    ||||| ||||||||||||||||| ||| || ||| || | ||| ||||| ||||| | ||||||||||||||||||    
T  48806535 tcctcggcagttaactgcagccggttctttaaaatttcgacagttaactgccgaaaggtatttggataaattactc 48806460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 38368278 - 38368206
Alignment:
Q  159 tcctctgcagttaactgcagccgattccttcaaaatttggcagctaactaccgaatgatatttggataaattactc 234  Q
    ||||| ||||||||||||||||| ||   ||| |||| ||||| ||||| ||||| || |||||||||||||||||    
T  38368278 tcctcggcagttaactgcagccggtt---tcataattcggcagttaactgccgaaggacatttggataaattactc 38368206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 55794057 - 55793981
Alignment:
Q  102 ttggaagatgagatgaataatggatga-aagagtttttgccaga-tttgta--gcagaagatcctctgcagttaact 174  Q
    ||||||||| ||||||||||||||||| | ||| || ||||||| ||||||  ||||||||||||| ||||||||||    
T  55794057 ttggaagataagatgaataatggatgagaggagattctgccagattttgtagtgcagaagatcctcggcagttaact 55793981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 5e-27; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 102 - 176
Target Start/End: Original strand, 18441381 - 18441455
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgc 176  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||    
T  18441381 ttggaagatgagatgaataatggatgagagagtttctgccagatttgtagcagaagatcctcggcagttaactgc 18441455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 102 - 177
Target Start/End: Complemental strand, 3395999 - 3395924
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgca 177  Q
    ||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||| |||||||||||||    
T  3395999 ttggaagatgagatgaataatggatgagagagtttctgccatatttgtagcagaagatcctcggcagttaactgca 3395924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 105 - 181
Target Start/End: Complemental strand, 22547573 - 22547497
Alignment:
Q  105 gaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgcagccg 181  Q
    |||||||||||||||||| ||||| |||| || |||||||||||||| ||||||||||| | |||||||||||||||    
T  22547573 gaagatgagatgaataattgatgagagagcttctgccagatttgtagtagaagatcctcggtagttaactgcagccg 22547497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 41858063 - 41858135
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    ||||||||| ||||||||||||||||| |||| || ||||||||||||||||||||||||||  |||||||||    
T  41858063 ttggaagataagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcgacagttaact 41858135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 26451610 - 26451541
Alignment:
Q  105 gaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    |||||||| ||||||||| ||||| |||| || |||||||||||||||||||||||||| ||||||||||    
T  26451610 gaagatgatatgaataatagatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 26451541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 41274722 - 41274653
Alignment:
Q  105 gaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    |||||||||||||||||||||||| |||| || |||||||||| ||| ||||||| ||| ||||||||||    
T  41274722 gaagatgagatgaataatggatgagagagcttctgccagatttatagtagaagattctcggcagttaact 41274653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 180
Target Start/End: Complemental strand, 37779783 - 37779707
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgcagcc 180  Q
    ||||||||| |||||||||||||||||  ||| || || |||||||||||||||| ||||||  |||||||||||||||    
T  37779783 ttggaagataagatgaataatggatga--gagcttctgtcagatttgtagcagaatatcctcgacagttaactgcagcc 37779707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 24860512 - 24860448
Alignment:
Q  105 gaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagt 169  Q
    |||||||||||||||||| ||||| |||| || || || |||| ||||||||||||||| |||||    
T  24860512 gaagatgagatgaataatagatgagagagcttctgtcaaatttatagcagaagatcctccgcagt 24860448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 42602589 - 42602521
Alignment:
Q  106 aagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    ||||| ||||||||||||||||| | |  || || |||||||||| |||||||||||| ||||||||||    
T  42602589 aagataagatgaataatggatgagacaacttatgtcagatttgtatcagaagatcctcggcagttaact 42602521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 177
Target Start/End: Complemental strand, 38871870 - 38871831
Alignment:
Q  138 tgccagatttgtagcagaagatcctctgcagttaactgca 177  Q
    |||||||||||||||||||||||||  |||||||||||||    
T  38871870 tgccagatttgtagcagaagatccttggcagttaactgca 38871831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 40740956 - 40740881
Alignment:
Q  159 tcctctgcagttaactgcagccgattccttcaaaatttggcagctaactaccgaatgatatttggataaattactc 234  Q
    ||||| ||||||||||||||||| ||| || ||| || ||||| |||||  |||| ||||||||| ||||||||||    
T  40740956 tcctcggcagttaactgcagccggttctttaaaatttcggcagttaactgtcgaaggatatttgggtaaattactc 40740881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 7120944 - 7120875
Alignment:
Q  165 gcagttaactgcagccgattccttcaaaatttggcagctaactaccgaatgatatttggataaattactc 234  Q
    |||| |||||||||||| || ||| ||||||  |||| ||||| ||||| ||||||| ||||||||||||    
T  7120944 gcagctaactgcagccggtttctttaaaattcagcagttaactgccgaaggatatttagataaattactc 7120875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 65
Target Start/End: Complemental strand, 22547573 - 22547540
Alignment:
Q  32 gaagatgaaatgaataattgatgagagagcttct 65  Q
    |||||||| |||||||||||||||||||||||||    
T  22547573 gaagatgagatgaataattgatgagagagcttct 22547540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 5e-27; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 102 - 184
Target Start/End: Original strand, 14174851 - 14174933
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgcagccgatt 184  Q
    ||||||||||||||||||||||||||| |||| || |||||||||| ||||||||||||||| ||||||||||||||||||||    
T  14174851 ttggaagatgagatgaataatggatgagagagcttctgccagatttttagcagaagatcctcggcagttaactgcagccgatt 14174933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 105 - 181
Target Start/End: Original strand, 27487609 - 27487685
Alignment:
Q  105 gaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgcagccg 181  Q
    |||||||||||||||||||||||| |||| || |||||||||||||||||||||||||| |||||||||||||||||    
T  27487609 gaagatgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaactgcagccg 27487685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 103 - 174
Target Start/End: Original strand, 42572698 - 42572769
Alignment:
Q  103 tggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    |||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||| ||||||||||    
T  42572698 tggaagatgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 42572769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 29763162 - 29763231
Alignment:
Q  105 gaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    |||||||||||||||||||||||| |||| || |||||||||||||||||||||||||| ||||||||||    
T  29763162 gaagatgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 29763231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 102 - 233
Target Start/End: Original strand, 26637196 - 26637336
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcc---------tctgcagttaactgcagccgattccttcaaa 192  Q
    ||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||         || ||||||||||||||||| || |||||||    
T  26637196 ttggaagatgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggtaacttcggcagttaactgcagccggtttcttcaaa 26637295  T
Q  193 atttggcagctaactaccgaatgatatttggataaattact 233  Q
    ||| | ||| ||||||||||    ||||| |||||||||||    
T  26637296 attcgacagataactaccgagaagtatttagataaattact 26637336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 105 - 177
Target Start/End: Complemental strand, 44596965 - 44596893
Alignment:
Q  105 gaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgca 177  Q
    |||||||||||||||||||||||| ||||||| ||||| |||||||||||||||| ||| |||||||||||||    
T  44596965 gaagatgagatgaataatggatgagagagtttctgccaaatttgtagcagaagatactcagcagttaactgca 44596893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 102 - 181
Target Start/End: Complemental strand, 49426821 - 49426741
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaag-agtttttgccagatttgtagcagaagatcctctgcagttaactgcagccg 181  Q
    ||||||||||||||||||||||||||| || || || |||||||||||||||||||||||||| |||||||| ||||||||    
T  49426821 ttggaagatgagatgaataatggatgagaggagattctgccagatttgtagcagaagatcctcggcagttaattgcagccg 49426741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 106 - 175
Target Start/End: Complemental strand, 13147625 - 13147556
Alignment:
Q  106 aagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactg 175  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||  ||||||||||    
T  13147625 aagatgagatgaataatggatgagagagtttttaccagatttgtagcagaagatcatcgacagttaactg 13147556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 105 - 234
Target Start/End: Complemental strand, 4208511 - 4208371
Alignment:
Q  105 gaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcct-----------ctgcagttaactgcagccgattccttcaaaa 193  Q
    |||||||| ||||||||||||||| |||| || ||  |||||||||||||||||||||           | ||||||||||||||||| |||||||||||    
T  4208511 gaagatgatatgaataatggatgagagagcttctggtagatttgtagcagaagatccttggtagaacctcggcagttaactgcagccggttccttcaaaa 4208412  T
Q  194 tttggcagctaactaccgaatgatatttggataaattactc 234  Q
    || ||||| ||||| ||||| ||||||||  ||||||||||    
T  4208411 ttcggcagttaactgccgaaggatatttgagtaaattactc 4208371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 102 - 163
Target Start/End: Complemental strand, 13972195 - 13972134
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctc 163  Q
    ||||||||||||||||||||| ||||| |||| || ||||||||||||||||||||||||||    
T  13972195 ttggaagatgagatgaataatagatgagagagcttctgccagatttgtagcagaagatcctc 13972134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 49927444 - 49927513
Alignment:
Q  105 gaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    |||||| ||||||||||||||||| |||| || |||||||||||||||||||||||||| | ||||||||    
T  49927444 gaagataagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggtagttaact 49927513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 6434881 - 6434809
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    ||||||||||||||||||||||||||| || | || | |||||||||||||||||||||||  ||||||||||    
T  6434881 ttggaagatgagatgaataatggatgagagtgcttctaccagatttgtagcagaagatccttggcagttaact 6434809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 102 - 180
Target Start/End: Original strand, 35526975 - 35527057
Alignment:
Q  102 ttggaagatgagatgaataatggat--gaaagagtttttgccaga--tttgtagcagaagatcctctgcagttaactgcagcc 180  Q
    |||||||||||||||||||||||||  || |||| || ||||| |  |||||||||||||||||||| |||||||||||||||    
T  35526975 ttggaagatgagatgaataatggatgagatagaggttctgccatatttttgtagcagaagatcctctacagttaactgcagcc 35527057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 163
Target Start/End: Complemental strand, 36908707 - 36908642
Alignment:
Q  102 ttggaagatgagatgaataatggatgaa----agagtttttgccagatttgtagcagaagatcctc 163  Q
    ||||||||||||||||||||||||||||    |||| || |||||||||||||||||||| |||||    
T  36908707 ttggaagatgagatgaataatggatgaatgagagagcttctgccagatttgtagcagaagctcctc 36908642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 29435100 - 29435034
Alignment:
Q  107 agatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    |||||||||||||||||||||| |||  || ||||| |||||||||| || |||||||||||||||||    
T  29435100 agatgagatgaataatggatgagagaacttctgccaaatttgtagca-aaaatcctctgcagttaact 29435034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 29709255 - 29709309
Alignment:
Q  106 aagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatc 160  Q
    |||||||||||||||||||||||||||| || ||| |||||| ||||| ||||||    
T  29709255 aagatgagatgaataatggatgaaagagcttctgctagatttatagcaaaagatc 29709309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 174
Target Start/End: Complemental strand, 49395714 - 49395664
Alignment:
Q  124 gatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    ||||| |||| || |||||||||||||||||||||||||| ||||||||||    
T  49395714 gatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 49395664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 51269068 - 51269010
Alignment:
Q  105 gaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctc 163  Q
    ||||||||||||||||||| |||| |||| || ||| | ||||||||||||||||||||    
T  51269068 gaagatgagatgaataatgaatgagagagcttctgctaaatttgtagcagaagatcctc 51269010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 49395647 - 49395578
Alignment:
Q  165 gcagttaactgcagccgattccttcaaaatttggcagctaactaccgaatgatatttggataaattactc 234  Q
    ||||||||||||||||| ||| ||||||||| |||   ||||||||||| | |||||||| |||||||||    
T  49395647 gcagttaactgcagccggttctttcaaaattcggctattaactaccgaagggtatttggacaaattactc 49395578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 148
Target Start/End: Complemental strand, 41779812 - 41779766
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttg 148  Q
    ||||||||||||||||||||||||||| |||| || ||| |||||||    
T  41779812 ttggaagatgagatgaataatggatgagagagcttctgctagatttg 41779766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 4208511 - 4208470
Alignment:
Q  32 gaagatgaaatgaataattgatgagagagcttctagtagatt 73  Q
    |||||||| ||||||||| ||||||||||||||| |||||||    
T  4208511 gaagatgatatgaataatggatgagagagcttctggtagatt 4208470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 7943024 - 7942971
Alignment:
Q  159 tcctctgcagttaactgcagccgattccttcaaaatttggcagctaactaccga 212  Q
    ||||| ||||||||||||||||||||| || ||| |||||||| ||||| ||||    
T  7943024 tcctcggcagttaactgcagccgattcttttaaattttggcagttaactgccga 7942971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 19159760 - 19159684
Alignment:
Q  102 ttggaagatgagatgaataatggatga-aagagtttttgccaga-tttgta--gcagaagatcctctgcagttaact 174  Q
    ||||||||| ||||||||||||||||| | ||| || ||||||| ||||||  ||||||||||||| ||||||||||    
T  19159760 ttggaagataagatgaataatggatgagaggagattctgccagattttgtagcgcagaagatcctcggcagttaact 19159684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 21188366 - 21188445
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgcagccg 181  Q
    |||||| |||||||||||||||||||| |||| || |||||||||||||||||||||||||| |||||||||||||||||    
T  21188366 ttggaaaatgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaactgcagccg 21188445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 46863284 - 46863356
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| || ||||||||||    
T  46863284 ttggaagatgagatgaataatggatgaaagagcttctgccagatttgtagcagaagatcttcggcagttaact 46863356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 30355182 - 30355251
Alignment:
Q  105 gaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    |||||| ||||||||||||||||| |||| || |||||||||||||||||||||||||| ||||||||||    
T  30355182 gaagataagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 30355251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 41047910 - 41047838
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    ||||||||||||||||||||||||||| |||| ||   |||||||||||||||||||||||| ||||||||||    
T  41047910 ttggaagatgagatgaataatggatgagagagcttcctccagatttgtagcagaagatcctcggcagttaact 41047838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 107 - 181
Target Start/End: Complemental strand, 34139999 - 34139925
Alignment:
Q  107 agatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgcagccg 181  Q
    |||||||||||||||||||| | |||| || ||||||||||||||  |||||||||| |||||||||||||||||    
T  34139999 agatgagatgaataatggataagagagcttctgccagatttgtagaggaagatcctcggcagttaactgcagccg 34139925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 42682127 - 42682057
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaa 172  Q
    ||||||||||||||||||||||||||| |||  || ||| |||||||||||||||||||||| ||||||||    
T  42682127 ttggaagatgagatgaataatggatgagagaacttatgctagatttgtagcagaagatcctcggcagttaa 42682057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 17838784 - 17838711
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaag-agtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    ||||||||||||||||||||||||||| || || || ||||||||||||||||||||||| || ||||||||||    
T  17838784 ttggaagatgagatgaataatggatgagaggagattctgccagatttgtagcagaagatcgtcggcagttaact 17838711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 102 - 163
Target Start/End: Complemental strand, 48269774 - 48269713
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctc 163  Q
    ||||||||||||||||||||||||||| |||  ||||| |||||||||||||||||||||||    
T  48269774 ttggaagatgagatgaataatggatgagagaacttttgtcagatttgtagcagaagatcctc 48269713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 174
Target Start/End: Original strand, 28115473 - 28115544
Alignment:
Q  103 tggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    |||||||||||||||||||||||||| |||| || ||| ||||||||||||||||| ||||  |||||||||    
T  28115473 tggaagatgagatgaataatggatgagagagcttatgctagatttgtagcagaagaccctcaacagttaact 28115544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 36394882 - 36394950
Alignment:
Q  106 aagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    |||||||||| ||||| |||||| |||| || |||||||||||||||||||||||||| | ||||||||    
T  36394882 aagatgagattaataacggatgagagagcttctgccagatttgtagcagaagatcctcggtagttaact 36394950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 174
Target Start/End: Original strand, 28980117 - 28980184
Alignment:
Q  107 agatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    ||||| |||||||||||||||| |||| || || |||||||||||||||| |||||| ||||||||||    
T  28980117 agatgggatgaataatggatgagagagcttctgtcagatttgtagcagaaaatcctcggcagttaact 28980184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 40587791 - 40587722
Alignment:
Q  105 gaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    |||||||||||||||||||||||| |||| || |  ||||||| ||||| ||||||||| ||||||||||    
T  40587791 gaagatgagatgaataatggatgagagagcttctttcagatttatagcataagatcctcggcagttaact 40587722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 43686850 - 43686919
Alignment:
Q  105 gaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    |||||| | ||||||||||||||| |||| || || |||||||||||||||| || ||| ||||||||||    
T  43686850 gaagataaaatgaataatggatgagagagcttatgtcagatttgtagcagaaaattctcggcagttaact 43686919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 45364163 - 45364227
Alignment:
Q  105 gaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagt 169  Q
    |||||||||||||||||| ||| | |||| || | ||||||||||||| |||||||||| |||||    
T  45364163 gaagatgagatgaataatagataagagagcttctaccagatttgtagccgaagatcctcggcagt 45364227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 234
Target Start/End: Complemental strand, 12080460 - 12080396
Alignment:
Q  167 agttaactgcagccgattccttcaaaatttggcagctaactaccgaatgatatttggataaattactc 234  Q
    |||||||||||||||||||| |   |||| ||||| |||||||||||  | |||||||||||||||||    
T  12080460 agttaactgcagccgattccat---aattcggcagttaactaccgaagaacatttggataaattactc 12080396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 102 - 184
Target Start/End: Original strand, 19454291 - 19454373
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgcagccgatt 184  Q
    ||||||||||||||||||||||||||| |||| || |||||||||||||| ||||||||||| ||||||||||||| ||||||    
T  19454291 ttggaagatgagatgaataatggatgagagagcttctgccagatttgtagtagaagatcctcggcagttaactgcaaccgatt 19454373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 52570506 - 52570578
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    |||||||||||||||||||||| |||| ||||||| |||||||||||||| ||||||||||| ||||||||||    
T  52570506 ttggaagatgagatgaataatgaatgagagagtttctgccagatttgtagtagaagatcctcggcagttaact 52570578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 107 - 174
Target Start/End: Original strand, 34694379 - 34694446
Alignment:
Q  107 agatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    |||||||||||||||||||||| |||| || |||||||||||||||||||||||||| ||||||||||    
T  34694379 agatgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 34694446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 51696517 - 51696586
Alignment:
Q  105 gaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    |||||||||||||||||||||||| |||| || ||||||||||| |||||||||||||| ||||||||||    
T  51696517 gaagatgagatgaataatggatgagagagcttctgccagatttgcagcagaagatcctcggcagttaact 51696586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 55207606 - 55207675
Alignment:
Q  105 gaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    |||||| ||||||||||||||||| |||| || |||||||||||||||||||||||||| ||||||||||    
T  55207606 gaagataagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 55207675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 43568999 - 43568927
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    ||||||||||||||||||||||||||| |||| || || |||||||||| |||||||||||| ||||||||||    
T  43568999 ttggaagatgagatgaataatggatgagagagcttctgtcagatttgtaacagaagatcctcagcagttaact 43568927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 45101788 - 45101860
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    |||||||||||||||||||||  |||| |||| || |||||||||||||||||||||||||| ||||||||||    
T  45101788 ttggaagatgagatgaataatatatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 45101860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 51402338 - 51402410
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    ||||||||| ||||||||||||||||| |||| || || ||||||||||||||||||||||| ||||||||||    
T  51402338 ttggaagataagatgaataatggatgagagagcttctgacagatttgtagcagaagatcctcggcagttaact 51402410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 2271252 - 2271325
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaag-agtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    |||||||||||||||||| |||||||| || || || |||||||||||||||||||||||||| ||||||||||    
T  2271252 ttggaagatgagatgaattatggatgagaggagattctgccagatttgtagcagaagatcctcggcagttaact 2271325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 36134457 - 36134384
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaag-agtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    ||||||||||||||||||||||||| | || || || |||||||||||||||||||||||||| ||||||||||    
T  36134457 ttggaagatgagatgaataatggataagaggagattctgccagatttgtagcagaagatcctcggcagttaact 36134384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 41803128 - 41803059
Alignment:
Q  105 gaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    |||||| ||||||||||||||||| |||| || |||||||||||||||| ||||||||| ||||||||||    
T  41803128 gaagataagatgaataatggatgagagagcttctgccagatttgtagcaaaagatcctcggcagttaact 41803059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 43476322 - 43476253
Alignment:
Q  105 gaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    |||||||||||||||||||||||| |||| || || ||||||||||||| ||||||||| ||||||||||    
T  43476322 gaagatgagatgaataatggatgagagagcttctgtcagatttgtagcaaaagatcctcggcagttaact 43476253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 55385267 - 55385198
Alignment:
Q  105 gaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    ||||||||||| |||||||||||| |||| || ||||||||||||||||||||||||||  |||||||||    
T  55385267 gaagatgagattaataatggatgagagagcttctgccagatttgtagcagaagatcctcgacagttaact 55385198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 7245223 - 7245155
Alignment:
Q  104 ggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaa 172  Q
    ||||||||||||||||||||||||| |||| || || ||||||||||||||||||| ||| ||||||||    
T  7245223 ggaagatgagatgaataatggatgagagagcttctgtcagatttgtagcagaagatactcggcagttaa 7245155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 102 - 170
Target Start/End: Complemental strand, 41577208 - 41577140
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagtt 170  Q
    ||||||||||||||| ||||||||||| |||| || ||| |||||||||||||||||||||| ||||||    
T  41577208 ttggaagatgagatggataatggatgagagagcttctgcaagatttgtagcagaagatcctcggcagtt 41577140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 172
Target Start/End: Original strand, 4004742 - 4004813
Alignment:
Q  102 ttggaagatgagatgaataatggatga-aagagtttttgccagatttgtagcagaagatcctctgcagttaa 172  Q
    ||||||||||||||||||||||||||| | ||| || |||||| ||||||||||||||||||| ||||||||    
T  4004742 ttggaagatgagatgaataatggatgagaggagattctgccaggtttgtagcagaagatcctcggcagttaa 4004813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 41137838 - 41137780
Alignment:
Q  105 gaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctc 163  Q
    |||||||| ||||||||||||||| |||| || ||||||||||||||||||||||||||    
T  41137838 gaagatgaaatgaataatggatgagagagcttctgccagatttgtagcagaagatcctc 41137780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 49609513 - 49609444
Alignment:
Q  105 gaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    ||||||||||||||||||| || | |||| || |||||||||||||||||||| ||||| ||||||||||    
T  49609513 gaagatgagatgaataatgaataagagagcttatgccagatttgtagcagaagttcctcggcagttaact 49609444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 174
Target Start/End: Original strand, 13896821 - 13896888
Alignment:
Q  107 agatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    |||||||||||||||||||||| |||| || |||||||||||||| |||| ||| || ||||||||||    
T  13896821 agatgagatgaataatggatgagagagcttctgccagatttgtagtagaaaatcttcggcagttaact 13896888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 2426617 - 2426559
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatc 160  Q
    |||||||||||||||||||||| |||| |||| || ||||| |||| ||||||||||||    
T  2426617 ttggaagatgagatgaataatgaatgagagagcttctgccaaatttatagcagaagatc 2426559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 174
Target Start/End: Original strand, 24703359 - 24703427
Alignment:
Q  109 atgagatgaataatg---gatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    |||||||||||||||   ||||| |||| || ||||||||||||||||||||||| || ||||||||||    
T  24703359 atgagatgaataatgatggatgagagagcttctgccagatttgtagcagaagatcatcggcagttaact 24703427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 163
Target Start/End: Original strand, 49219734 - 49219792
Alignment:
Q  105 gaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctc 163  Q
    |||||||||||||||||||||||  |||| || || || ||||||||||||||||||||    
T  49219734 gaagatgagatgaataatggatgggagagcttctgtcaaatttgtagcagaagatcctc 49219792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 34648147 - 34648218
Alignment:
Q  107 agatgagatgaataatggatgaaagagtttttgccaga--tttgtagcagaagatcctctgcagttaactgc 176  Q
    |||||||||||||||||||||| |||| || |||||||  ||||||||| ||||||||| ||| || |||||    
T  34648147 agatgagatgaataatggatgagagagcttctgccagaattttgtagcataagatcctcagcaatttactgc 34648218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 102 - 181
Target Start/End: Complemental strand, 46402493 - 46402410
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaag-agtttttgccagattt-gtag--cagaagatcctctgcagttaactgcagccg 181  Q
    ||||||||| |||| |||||||||||| || || || |||||||||| ||||  |||||||||||| |||||||||||||||||    
T  46402493 ttggaagataagatcaataatggatgagaggagattctgccagattttgtagtgcagaagatcctcggcagttaactgcagccg 46402410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 234
Target Start/End: Original strand, 32593143 - 32593210
Alignment:
Q  167 agttaactgcagccgattccttcaaaatttggcagctaactaccgaatgatatttggataaattactc 234  Q
    ||||||||||||||| ||| || ||| || | ||| ||||| ||||| ||||||||||||||||||||    
T  32593143 agttaactgcagccggttctttaaaatttcgacagttaactgccgaaagatatttggataaattactc 32593210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 46347661 - 46347719
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatc 160  Q
    |||||||||  |||||| ||||||||| ||||||| | || ||||||||||||||||||    
T  46347661 ttggaagataggatgaacaatggatgagagagtttctccctgatttgtagcagaagatc 46347719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 65
Target Start/End: Complemental strand, 41137838 - 41137805
Alignment:
Q  32 gaagatgaaatgaataattgatgagagagcttct 65  Q
    |||||||||||||||||| |||||||||||||||    
T  41137838 gaagatgaaatgaataatggatgagagagcttct 41137805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 5e-21; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 18307387 - 18307315
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    ||||||||||||||||||||||||||| || | || |||||||||||||||||||||||||| ||||||||||    
T  18307387 ttggaagatgagatgaataatggatgagagggcttctgccagatttgtagcagaagatcctcggcagttaact 18307315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 35564394 - 35564322
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    |||||||||||| |||||||||||||| |||| || |||||||||||||||||||||||||| ||||||||||    
T  35564394 ttggaagatgaggtgaataatggatgagagagcttatgccagatttgtagcagaagatcctcagcagttaact 35564322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 42865744 - 42865819
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgca 177  Q
    ||||||||| ||||||||||||||||| |||| || |||||||||||||||||||||||||| ||| |||||||||    
T  42865744 ttggaagataagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcaattaactgca 42865819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 542733 - 542802
Alignment:
Q  105 gaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    |||||||||||||||||||||||| |||  || |||||||||||||||||||||||||| ||||||||||    
T  542733 gaagatgagatgaataatggatgagagaacttctgccagatttgtagcagaagatcctcggcagttaact 542802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 25497644 - 25497572
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    ||||||||||||||||||||||||||| |||| || |||| ||||||||||||||||| ||| ||||||||||    
T  25497644 ttggaagatgagatgaataatggatgagagagcttctgcctgatttgtagcagaagattctcggcagttaact 25497572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 11346141 - 11346068
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaag-agtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    ||||||||||||||||||||||||||| || || || ||||||||||||||||||||||||||  |||||||||    
T  11346141 ttggaagatgagatgaataatggatgagaggagattctgccagatttgtagcagaagatcctcgacagttaact 11346068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 3600467 - 3600398
Alignment:
Q  105 gaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    ||||||||||||||||||| ||||||||  || || ||||||||||||||||||||||| || |||||||    
T  3600467 gaagatgagatgaataatgcatgaaagaacttctgtcagatttgtagcagaagatcctcggctgttaact 3600398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 8537295 - 8537226
Alignment:
Q  106 aagatgagatgaataatggatgaaag-agtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    ||||||||||||||||||||||| || || || || |||||||||||||||| |||||| ||||||||||    
T  8537295 aagatgagatgaataatggatgagaggagattctggcagatttgtagcagaacatcctcggcagttaact 8537226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 1401380 - 1401428
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttgta 150  Q
    ||||||||||||||||||||||||||| |||| || ||| |||||||||    
T  1401380 ttggaagatgagatgaataatggatgagagagcttctgctagatttgta 1401428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 124 - 174
Target Start/End: Complemental strand, 20192464 - 20192414
Alignment:
Q  124 gatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    ||||| |||| || |||||||||||||||||||||||||| ||| ||||||    
T  20192464 gatgagagagcttctgccagatttgtagcagaagatcctcggcatttaact 20192414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 35564310 - 35564236
Alignment:
Q  160 cctctgcagttaactgcagccgattccttcaaaatttggcagctaactaccgaatgatatttggataaattactc 234  Q
    |||| ||| ||||||||||| | ||||||||||||| ||||| ||||| |||||  |||||||  ||||||||||    
T  35564310 cctcggcaattaactgcagctggttccttcaaaattcggcagttaactgccgaagaatatttgagtaaattactc 35564236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 213
Target Start/End: Original strand, 8576906 - 8577022
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaag-agtttttgccagattt-gtagc--agaagatcctctgcagttaactgcagccgattccttcaaaattt- 196  Q
    ||||||||| ||||||||||||| ||| || || || |||||||||| |||||  ||||||||||  |||||||||||||||||  |  ||||||||||     
T  8576906 ttggaagataagatgaataatgggtgagaggagattctgccagattttgtagcgcagaagatccttggcagttaactgcagccggatttttcaaaatttc 8577005  T
Q  197 ggcagctaactaccgaa 213  Q
    ||||| ||||| |||||    
T  8577006 ggcagttaactgccgaa 8577022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 12327 - 12400
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaag-agtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    ||||||||||||||||||||||||||| || || || |||||||||||||||||||||||||| ||||||||||    
T  12327 ttggaagatgagatgaataatggatgagagtagattctgccagatttgtagcagaagatcctcggcagttaact 12400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 18839 - 18911
Alignment:
Q  102 ttggaagatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaact 174  Q
    ||||||||||||||||||||||||||| | || || ||||||||||||||||||||||||||  |||||||||    
T  18839 ttggaagatgagatgaataatggatgagaaagcttctgccagatttgtagcagaagatcctcgacagttaact 18911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 107 - 181
Target Start/End: Complemental strand, 924 - 850
Alignment:
Q  107 agatgagatgaataatggatgaaagagtttttgccagatttgtagcagaagatcctctgcagttaactgcagccg 181  Q
    |||||||||||||||||||| | |||| || ||||||||||||||  |||||||||| |||||||||||||||||    
T  924 agatgagatgaataatggataagagagcttctgccagatttgtagaggaagatcctcggcagttaactgcagccg 850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University