View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20626_low_13 (Length: 418)
Name: NF20626_low_13
Description: NF20626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20626_low_13 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 192 - 418
Target Start/End: Original strand, 7035151 - 7035377
Alignment:
| Q |
192 |
atgcagatatccagtagtagcataagtttatttgtttatctcactctctttatgctgatattttctcctactagttccagccctgttcctcagataaaat |
291 |
Q |
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| T |
7035151 |
atgcagatatcctgtagtagcataagtttatttgtttatctcactctctttatgctgatattttctcctactagttccagccctgttcctcagataaaat |
7035250 |
T |
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| Q |
292 |
atgatgtctttgttagcttcaggggtagtgatattcgcaaaaatttccttagacatgttcttgaggctttttcgcgaaagaaaattgtagtcttttctga |
391 |
Q |
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| T |
7035251 |
atgatgtctttgttagcttcaggggtagtgatattcgcaaaaatttccttagccatgttcttgaggctttttcgcgaaagaaaattgtagtcttttctga |
7035350 |
T |
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| Q |
392 |
caagaagcttcgaggaggagatgaaat |
418 |
Q |
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| T |
7035351 |
caagaagcttcgaggaggagacgaaat |
7035377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 7034980 - 7035100
Alignment:
| Q |
14 |
gaagaagaagatagcaacataactgtaatattgactggactaagtcggtactcattagtcaagtcatcaacagggcttaatctgatatctagcttgttga |
113 |
Q |
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| T |
7034980 |
gaagaagaagatagcaacataactgtaatattgactggactaagtcggtactcattagtcaagtcatcaacagggcttaatctgatatctagcttgttga |
7035079 |
T |
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| Q |
114 |
atgcagctataatttaaagtc |
134 |
Q |
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| T |
7035080 |
atgcagctataatttaaagtc |
7035100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 248 - 400
Target Start/End: Original strand, 7028505 - 7028657
Alignment:
| Q |
248 |
gatattttctcctactagttccagccctgttcctcagataaaatatgatgtctttgttagcttcaggggtagtgatattcgcaaaaatttccttagacat |
347 |
Q |
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| T |
7028505 |
gatattttctccttctacttctatccctgcacctcagataaaatatgatgtctttgttagctttagaggtagtgacattcgcaaaaatttccttagccat |
7028604 |
T |
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| Q |
348 |
gttcttgaggctttttcgcgaaagaaaattgtagtcttttctgacaagaagct |
400 |
Q |
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| T |
7028605 |
gtcctcgacgctttgtcgcgaaagggaatcattgttttttctgacaaaaagct |
7028657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 249 - 401
Target Start/End: Complemental strand, 7078722 - 7078570
Alignment:
| Q |
249 |
atattttctcctactagttccagccctgttcctcagataaaatatgatgtctttgttagcttcaggggtagtgatattcgcaaaaatttccttagacatg |
348 |
Q |
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| T |
7078722 |
atattttctccttctacttctatccctgctcctcagataaaatatgatgtctttgttagctttagaggcagtgacattcgcaaacacttccttagccatg |
7078623 |
T |
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| Q |
349 |
ttcttgaggctttttcgcgaaagaaaattgtagtcttttctgacaagaagctt |
401 |
Q |
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| T |
7078622 |
tcctcgaagctttgtcgcgaaagagaatcgttgttttttctgacaaaaagctt |
7078570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 283 - 418
Target Start/End: Original strand, 7020934 - 7021069
Alignment:
| Q |
283 |
agataaaatatgatgtctttgttagcttcaggggtagtgatattcgcaaaaatttccttagacatgttcttgaggctttttcgcgaaagaaaattgtagt |
382 |
Q |
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|||||||| |||||||||||||||||||||||||| |||| |||| |||||||||||| ||||| |||| |||||||||||||||| |||| || |
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| T |
7020934 |
agataaaacatgatgtctttgttagcttcaggggtgaggatacccgcagaaatttccttagccatgtccttgtggctttttcgcgaaagcaaataaatgt |
7021033 |
T |
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| Q |
383 |
cttttctgacaagaagcttcgaggaggagatgaaat |
418 |
Q |
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| T |
7021034 |
attttctgacaagaaacttgaagaaggagatgaaat |
7021069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 7028415 - 7028456
Alignment:
| Q |
200 |
atccagtagtagcataagtttatttgtttatctcactctctt |
241 |
Q |
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||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
7028415 |
atccagtagtagcataagtttgtttctttatctcactctctt |
7028456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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