View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20626_low_15 (Length: 381)
Name: NF20626_low_15
Description: NF20626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20626_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 372
Target Start/End: Complemental strand, 2670257 - 2669904
Alignment:
| Q |
19 |
aaattagactgcaacaaccctgcaggataataataagcttcatgttcatcaacaactattttatcattaagagcagctattgtgcttagtattggtactc |
118 |
Q |
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| T |
2670257 |
aaattagactgcaacaaccctgcaggataataataagcttcatgttcatcaacaactattttatcattaagagcagctattgtgcttagtattggtactc |
2670158 |
T |
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| Q |
119 |
caccaaaagattgaccattccatgaaccacttctaaacaccctttgttgcttgttccacaagtaaatatctggaacaccatgataatcaagactgaaatg |
218 |
Q |
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| T |
2670157 |
caccaaaagattgaccattccatgaaccacttctaaacaccctttgttgcttgttccacaagtaaatatctggaacaccatgataatcaagactgaaatg |
2670058 |
T |
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| Q |
219 |
actatctccagttgatggatcatcttgacttttccacgaagttattcgaatctcgataccagtgtcaaggttccaaccaagtttcatacctggtaacaaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2670057 |
actatctccagttgatggatcatcttgacttttccatgaagttattcgaatctcgacaccagtgtcaaggttccaaccaagtttcatccctggtaacaaa |
2669958 |
T |
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| Q |
319 |
gtatctgttggatgatcaaaactctgccatatatagttactgttgtttttctct |
372 |
Q |
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| T |
2669957 |
gtatctgttggatgatcaaaactctgccatatatagttactgttgtttttctct |
2669904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 2686072 - 2686112
Alignment:
| Q |
309 |
tggtaacaaagtatctgttggatgatcaaaactctgccata |
349 |
Q |
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| T |
2686072 |
tggtaacaaagtatctgttggataatcaaagctttgccata |
2686112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 36361022 - 36360961
Alignment:
| Q |
288 |
gttccaaccaagtttcatacctggtaacaaagtatctgttggatgatcaaaactctgccata |
349 |
Q |
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||||||||||||||||||||| ||||||||||||||||| || | ||||||||| ||||||| |
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| T |
36361022 |
gttccaaccaagtttcataccaggtaacaaagtatctgtagggtaatcaaaactttgccata |
36360961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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