View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20626_low_16 (Length: 379)

Name: NF20626_low_16
Description: NF20626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20626_low_16
NF20626_low_16
[»] chr7 (1 HSPs)
chr7 (17-361)||(19808671-19809014)
[»] chr2 (27 HSPs)
chr2 (142-361)||(39138535-39138757)
chr2 (142-336)||(39152948-39153145)
chr2 (142-343)||(39472853-39473063)
chr2 (142-339)||(39396745-39396945)
chr2 (153-339)||(39380587-39380776)
chr2 (146-341)||(39216550-39216748)
chr2 (247-342)||(39196600-39196695)
chr2 (247-343)||(44624779-44624875)
chr2 (145-339)||(39604208-39604405)
chr2 (243-336)||(39421279-39421372)
chr2 (248-343)||(39371115-39371210)
chr2 (145-339)||(39493532-39493729)
chr2 (249-343)||(39387583-39387677)
chr2 (246-339)||(39126482-39126575)
chr2 (247-343)||(39205831-39205927)
chr2 (265-339)||(39425626-39425700)
chr2 (145-333)||(39144488-39144679)
chr2 (148-343)||(39188843-39189041)
chr2 (142-343)||(44615295-44615502)
chr2 (246-331)||(39099583-39099668)
chr2 (247-339)||(44895200-44895292)
chr2 (300-343)||(39413118-39413161)
chr2 (254-343)||(39223715-39223804)
chr2 (142-195)||(44624668-44624721)
chr2 (247-339)||(2362676-2362768)
chr2 (149-196)||(39425772-39425819)
chr2 (148-197)||(39099482-39099531)
[»] chr5 (2 HSPs)
chr5 (254-343)||(33562293-33562382)
chr5 (243-339)||(17060639-17060735)
[»] chr8 (2 HSPs)
chr8 (251-343)||(45342966-45343058)
chr8 (291-339)||(44730156-44730204)
[»] chr6 (1 HSPs)
chr6 (142-341)||(16114256-16114458)


Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 17 - 361
Target Start/End: Original strand, 19808671 - 19809014
Alignment:
Q  17 aatttcaattctttacaagtgtgtgattgtatatttatctctgattagggaacctttccccagagaatattcaataataaacaataatattcagttgttt 116  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19808671 aatttcaattcattacaagtgtgtgattgtatatttatctctgattaggaaacctttccccagagaatattcaataataaacaataatattcagttgttt 19808770  T
Q  117 atcctatttggtaccagtttctatcagaatcatcagatccaacaaaagttgttttggatataatacaaaacccaattattccatggtgtaacgagggaga 216  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  19808771 atcctatt-ggtaccagtttctatcagaatcatcagatccaacaaaagttgttttggatataatacaaaacccaattattccacgatgtaacgagggaga 19808869  T
Q  217 ccatgctgttattgatggtagcagtgtctttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagcta 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19808870 ccatgctgttattgatggtagcagtgtctttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagcta 19808969  T
Q  317 gcacttgatttgaaagctaacatgaaaagtactgaaaattctctg 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  19808970 gcacttgatttgaaagctaacatgaaaagtactgaaaattctctg 19809014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 142 - 361
Target Start/End: Original strand, 39138535 - 39138757
Alignment:
Q  142 agaatcatcagatccaacaaaagttgttttggatataatacaaaacccaattattccatggtgtaacgagggagaccatgctgt---tattgatggtagc 238  Q
    |||||||||||||||| ||||||||||||||||||||||||| || |||||||||||| |||||||  | ||||| ||||||||   |||||||| | ||    
T  39138535 agaatcatcagatccagcaaaagttgttttggatataatacagaagccaattattccacggtgtaagaatggagaacatgctgtgattattgatgatggc 39138634  T
Q  239 agtgtctttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaaca 338  Q
     |  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| || ||||||||||||    
T  39138635 tgcatctttctgctagaacaactgatgagaatctcaccgaagattaaacctgatgtaagagaagaagcattgaagctagcacttaatctgaaagctaaca 39138734  T
Q  339 tgaaaagtactgaaaattctctg 361  Q
    |||||| ||||||||||||||||    
T  39138735 tgaaaaatactgaaaattctctg 39138757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 142 - 336
Target Start/End: Original strand, 39152948 - 39153145
Alignment:
Q  142 agaatcatcagatccaacaaaagttgttttggatataatacaaaacccaattattccatggtgtaacgagggagaccatgctgttatt---gatggtagc 238  Q
    |||||||||||||||| ||||| |||| |||||||||||||| ||||||||||||||| ||| |||  | |||||||||||||| |||   |||||||||    
T  39152948 agaatcatcagatccagcaaaaattgtgttggatataatacagaacccaattattccacggtataagaacggagaccatgctgtgattatagatggtagc 39153047  T
Q  239 agtgtctttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaa 336  Q
     |  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| || |||| |||||||||||||||    
T  39153048 tgcatctttctgctagaacaactgatgagaatctcaccgaagattaaaccttgtgtaagagaagaagcattgaaactcgcacatgatttgaaagctaa 39153145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 142 - 343
Target Start/End: Complemental strand, 39473063 - 39472853
Alignment:
Q  142 agaatcatcagatccaacaaaagttgttttggatataatacaaaacccaattattccatggtgtaacgagggagaccatgctg---ttattgatggtagc 238  Q
    |||||||||||||||| ||||| ||||| ||||||||||||  ||||| ||||||||| |||||||  |||||||||||||||   ||||||||||||||    
T  39473063 agaatcatcagatccagcaaaatttgttctggatataatactgaacccgattattccacggtgtaagaagggagaccatgctgtgattattgatggtagc 39472964  T
Q  239 agtgtctttctgctagaacaactgatgagaatctcacc------gaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaag 332  Q
    |   |||||||| | ||||| ||||||| |||||||||      ||||||||  ||| |||||| | ||||  |||||||||| ||||||||||||||||    
T  39472963 aacatctttctgttggaacagctgatgaaaatctcaccgtcactgaagattagcccttgtgtaaaaaaagacgcattgaagctcgcacttgatttgaaag 39472864  T
Q  333 ctaacatgaaa 343  Q
     ||||||||||    
T  39472863 ttaacatgaaa 39472853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 142 - 339
Target Start/End: Complemental strand, 39396945 - 39396745
Alignment:
Q  142 agaatcatcagatccaacaaaagttgttttggatataatacaaaacccaattattccatggtgtaacgagggagaccatgctgt---tattgatggtagc 238  Q
    |||||||||||||||| ||| | ||||||||||||||||||||||||| |||||||||  ||||||  |||||||| ||| |||   |||||| | ||||    
T  39396945 agaatcatcagatccatcaagacttgttttggatataatacaaaaccccattattccactgtgtaagaagggagacaatggtgtggttattgaggatagc 39396846  T
Q  239 agtgtctttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaaca 338  Q
        |||   |||||||| ||||||||||||||||||| |  |||| |||| |||||||||||||| || |||||||||||| |||||||| |||| |||    
T  39396845 cacatctacgtgctagaagaactgatgagaatctcaccaactattagaccttgtgtaagagaagaagcactgaagctagcacatgatttgagagcttaca 39396746  T
Q  339 t 339  Q
    |    
T  39396745 t 39396745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 153 - 339
Target Start/End: Complemental strand, 39380776 - 39380587
Alignment:
Q  153 atccaacaaaagttgttttggatataatacaaaacccaattattccatggtgtaacgagggagaccatgctgttattg---atggtagcagtgtctttct 249  Q
    ||||| ||||||||||||| ||||||||||| || || |||| ||||  ||| ||  |||||||| ||||||| |||    ||| |||| |  |||||||    
T  39380776 atccagcaaaagttgttttagatataatacataaaccgattaatccactgtgcaagaagggagacaatgctgtgattttttatgatagccgcatctttct 39380677  T
Q  250 gctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacat 339  Q
    ||||||||||||||||||| |||||||||| ||| ||  | |||||||||||||| || ||| |||||||||||||||||||||| ||||    
T  39380676 gctagaacaactgatgagagtctcaccgaatattgaagattgtgtaagagaagaagcactgacgctagcacttgatttgaaagcttacat 39380587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 146 - 341
Target Start/End: Original strand, 39216550 - 39216748
Alignment:
Q  146 tcatcagatccaacaaaagttgttttggatataatacaaaacccaattattccatggtgtaacgagggagaccatgctgt---tattgatggtagcagtg 242  Q
    |||||||||||| ||| | ||||||||||||| ||||| ||||| | ||||| || ||||||  |||||||| |||||||   ||||| || |  |  |     
T  39216550 tcatcagatccatcaagacttgttttggatatgatacagaaccctactattcaattgtgtaagaagggagacaatgctgtgattattgctgattaccata 39216649  T
Q  243 tctttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatga 341  Q
    | | |  ||||||||||||||||| |||||||||  | ||||||||| |||||||||||||| |||||||||||||| ||||||||||| |||||||||    
T  39216650 tttattcgctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatga 39216748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 247 - 342
Target Start/End: Complemental strand, 39196695 - 39196600
Alignment:
Q  247 tctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatgaa 342  Q
    |||||| |||||||||||||||||||||||  | ||||||||| |||| ||| ||||| |||||||||||||| ||||||||||||||||||||||    
T  39196695 tctgctggaacaactgatgagaatctcaccagatattaaaccttgtgtgagaaaagaagcattgaagctagcatttgatttgaaagctaacatgaa 39196600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 247 - 343
Target Start/End: Original strand, 44624779 - 44624875
Alignment:
Q  247 tctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatgaaa 343  Q
    |||||||||| ||||||||| ||||||||| || ||||||||| |||||||||| ||| ||||||||||||| | ||| ||||||||||||||||||    
T  44624779 tctgctagaaaaactgatgacaatctcaccaaatattaaaccttgtgtaagagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaa 44624875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 145 - 339
Target Start/End: Original strand, 39604208 - 39604405
Alignment:
Q  145 atcatcagatccaacaaaagttgttttggatataatacaaaacccaattattccatggtgtaacgagggagaccatgctgt---tattgatggtagcagt 241  Q
    ||||||||||||| ||||||||||||||||||||||||| || || ||||||| |  || |||   ||||||| |||||||   |||||||| |||        
T  39604208 atcatcagatccatcaaaagttgttttggatataatacagaatcccattattcaaaagtataagatgggagacaatgctgtaattattgatgatagagac 39604307  T
Q  242 gtctttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacat 339  Q
     |  |||||||  |||||||||||||||||  |||  | ||||||||| |||||||||||||| || |||||||||||||| |||||||| |||||||    
T  39604308 attcttctgctcaaacaactgatgagaatcaaaccacatattaaacctcgtgtaagagaagaagcaatgaagctagcacttaatttgaaatctaacat 39604405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 243 - 336
Target Start/End: Complemental strand, 39421372 - 39421279
Alignment:
Q  243 tctttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaa 336  Q
    |||||||||||||||||||||||| |||||||||  | |||||| || |||||| ||||||| |||||||||| || |||||||||||||||||    
T  39421372 tctttctgctagaacaactgatgaaaatctcaccacatattaaaacttgtgtaaaagaagaagcattgaagctcgctcttgatttgaaagctaa 39421279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 248 - 343
Target Start/End: Original strand, 39371115 - 39371210
Alignment:
Q  248 ctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatgaaa 343  Q
    |||||||||||||| |||| ||||||||| || ||| | ||| |||||||||| ||| |||||||||||||||||||| ||||||| |||||||||    
T  39371115 ctgctagaacaacttatgaaaatctcaccaaatattgagccttgtgtaagagatgaagcattgaagctagcacttgatatgaaagccaacatgaaa 39371210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 145 - 339
Target Start/End: Complemental strand, 39493729 - 39493532
Alignment:
Q  145 atcatcagatccaacaaaagttgttttggatataatacaaaacccaattattccatggtgtaacgagggagaccatgctg---ttattgatggtagcagt 241  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||| ||||||  |  ||||||    |||||| ||||||   ||||||||| ||||       
T  39493729 atcatcagatccatcaaaagttgttttggatataatacagaaccccattattaaaaagtgtaagataggagacgatgctgcaattattgatgatagccac 39493630  T
Q  242 gtctttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacat 339  Q
     |  ||||||| ||| |||||| || |||||||||  | |||| ||||  ||||| ||||||| || ||||||||||||||||| |||||||||||||    
T  39493629 attcttctgctcgaagaactgaggaaaatctcaccagatattagacctcatgtaaaagaagaagcaatgaagctagcacttgatatgaaagctaacat 39493532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 249 - 343
Target Start/End: Complemental strand, 39387677 - 39387583
Alignment:
Q  249 tgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatgaaa 343  Q
    ||||||||||||||||||||| |||||| || ||| || || |||||| | ||||| ||||||||||||| | |||||| |||||||||||||||    
T  39387677 tgctagaacaactgatgagaacctcaccaaaaattgaaacttgtgtaaaaaaagaagcattgaagctagcgcgtgatttaaaagctaacatgaaa 39387583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 246 - 339
Target Start/End: Original strand, 39126482 - 39126575
Alignment:
Q  246 ttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacat 339  Q
    ||||||| ||||||||||||||||||||||  || ||| ||||| |||||||||||||| || |||||||||| ||| | |||||| |||||||    
T  39126482 ttctgctcgaacaactgatgagaatctcactaaatattgaacctcgtgtaagagaagaagcaatgaagctagctcttaaattgaaatctaacat 39126575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 247 - 343
Target Start/End: Complemental strand, 39205927 - 39205831
Alignment:
Q  247 tctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatgaaa 343  Q
    |||||| |||||||||||||||||||||||    ||| ||||| |||| |||||| || |||||||||||||| |||| ||||||||||| ||||||    
T  39205927 tctgcttgaacaactgatgagaatctcaccagttattgaaccttgtgtgagagaaaaagcattgaagctagcatttgacttgaaagctaagatgaaa 39205831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 265 - 339
Target Start/End: Complemental strand, 39425700 - 39425626
Alignment:
Q  265 gagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacat 339  Q
    ||||||||||||| | |||| ||||| ||||| ||||||| || ||||| |||||||||||||||||||||||||    
T  39425700 gagaatctcaccggatattagacctgatgtaaaagaagaagcaatgaagttagcacttgatttgaaagctaacat 39425626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 145 - 333
Target Start/End: Original strand, 39144488 - 39144679
Alignment:
Q  145 atcatcagatccaacaaaagttgttttggatataatacaaaacccaattattccatggtgtaacgagggagaccatgctg---ttattgatggtagcagt 241  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||| ||||||  |  ||||||    |||||| ||||||   ||||||||| ||||       
T  39144488 atcatcagatccatcaaaagttgttttggatataatacagaacccgattattaaaaagtgtaagataggagacgatgctgtaattattgatgatagccac 39144587  T
Q  242 gtctttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagc 333  Q
     |  |||||||  |  |||||| || ||||||||   | |||||||||  ||||| ||||||| || |||||||||||||||||||||||||    
T  39144588 attcttctgctcaaggaactgaggaaaatctcactagatattaaacctcatgtaaaagaagaagcaatgaagctagcacttgatttgaaagc 39144679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 148 - 343
Target Start/End: Complemental strand, 39189041 - 39188843
Alignment:
Q  148 atcagatccaacaaaagttgttttggatataatacaaaacccaattattccatggtgtaacgagggagaccatgctg---ttattgatggtagcagtgtc 244  Q
    |||||||||  ||||||||||||||||||||||||| ||||| ||||||| |  |||| |   ||||||| ||| ||   ||||||||| ||||    |     
T  39189041 atcagatccttcaaaagttgttttggatataatacagaaccccattattcaaaagtgtgagatgggagacaatgttgtaattattgatgatagccacatt 39188942  T
Q  245 tttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatgaaa 343  Q
     |||||||   |  ||||||||||||||||||  | |||||||||  ||||||||| ||  || |||| |||||||||||||| |||||||||||||||    
T  39188941 cttctgctcatagtactgatgagaatctcacctgacattaaacctcatgtaagagaggatgcaatgaaactagcacttgatttaaaagctaacatgaaa 39188843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 343
Target Start/End: Original strand, 44615295 - 44615502
Alignment:
Q  142 agaatcatcagatccaacaaaagttgttttggatataatacaaaacccaattattccatggtgtaacgagggagaccatgctgt---tattgatggtagc 238  Q
    |||||||||||||||| ||||| |||||||||||||||||| |||||| |  ||||||  |  |||  | |||||| | || ||   ||||||||   ||    
T  44615295 agaatcatcagatccagcaaaacttgttttggatataatactaaaccctacgattccactgcctaagaaaggagacaaagcggtgattattgatgaaggc 44615394  T
Q  239 agtgtctttctgctagaacaactgatgagaatctcaccgaagatta---aacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagcta 335  Q
     |  ||| |||||||||||||||||||| ||||||||| || ||||   || || |||||||||| ||| | |||||||||||   ||| ||||||||||    
T  44615395 tggatctatctgctagaacaactgatgataatctcaccaaatattattaaatcttgtgtaagagatgaagcgttgaagctagcgtgtgagttgaaagcta 44615494  T
Q  336 acatgaaa 343  Q
    ||||||||    
T  44615495 acatgaaa 44615502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 331
Target Start/End: Original strand, 39099583 - 39099668
Alignment:
Q  246 ttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaa 331  Q
    ||||||| |||||||||||||||||||||||  | || |||||| |||||||||||||| |  ||||||| |||||| | ||||||    
T  39099583 ttctgctcgaacaactgatgagaatctcaccacatatcaaaccttgtgtaagagaagaagcgatgaagctggcacttaagttgaaa 39099668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 247 - 339
Target Start/End: Complemental strand, 44895292 - 44895200
Alignment:
Q  247 tctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacat 339  Q
    ||||||||||  ||||||| |||| ||||| |  ||||||||| ||||||||||| || ||||||||||||||| | | || |||||||||||    
T  44895292 tctgctagaaacactgatgggaatgtcaccaattattaaacctcgtgtaagagaacaagcattgaagctagcacataaattcaaagctaacat 44895200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 300 - 343
Target Start/End: Complemental strand, 39413161 - 39413118
Alignment:
Q  300 aagaaacattgaagctagcacttgatttgaaagctaacatgaaa 343  Q
    ||||| |||||||||||||||||||||||||||||||| |||||    
T  39413161 aagaagcattgaagctagcacttgatttgaaagctaacttgaaa 39413118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 343
Target Start/End: Original strand, 39223715 - 39223804
Alignment:
Q  254 gaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatgaaa 343  Q
    |||||||||||||||||||||||  | ||| ||||| |||  |||||| || ||||||||||||||  |||||| ||||  |||||||||    
T  39223715 gaacaactgatgagaatctcaccagatattgaaccttgtgagagagaaaaagcattgaagctagcatatgatttaaaagaaaacatgaaa 39223804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 44624668 - 44624721
Alignment:
Q  142 agaatcatcagatccaacaaaagttgttttggatataatacaaaacccaattat 195  Q
    |||||||||||||||| ||||| ||||||||||||||||||  ||||| |||||    
T  44624668 agaatcatcagatccagcaaaaattgttttggatataatactgaaccccattat 44624721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 339
Target Start/End: Original strand, 2362676 - 2362768
Alignment:
Q  247 tctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacat 339  Q
    |||||| |||||||||||||||||||||||  |  ||||||||  |||  |||||||| || |||||||||||||| |  |||||||| ||||    
T  2362676 tctgctcgaacaactgatgagaatctcaccacatgttaaacctcatgtgcgagaagaagcaatgaagctagcacttaaactgaaagcttacat 2362768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 39425819 - 39425772
Alignment:
Q  149 tcagatccaacaaaagttgttttggatataatacaaaacccaattatt 196  Q
    ||||||||| |||||||||||||||| |||||||| ||||| ||||||    
T  39425819 tcagatccatcaaaagttgttttggaaataatacagaaccctattatt 39425772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 39099482 - 39099531
Alignment:
Q  148 atcagatccaacaaaagttgttttggatataatacaaaacccaattattc 197  Q
    |||||||||| ||||||| ||||||||||||||||| || || |||||||    
T  39099482 atcagatccatcaaaagtcgttttggatataatacagaatcccattattc 39099531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 254 - 343
Target Start/End: Original strand, 33562293 - 33562382
Alignment:
Q  254 gaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatgaaa 343  Q
    |||||||||||||||||||||||  | ||| ||||| |||| ||| ||||| |||||||||||||| |||||||||||||||||||||||    
T  33562293 gaacaactgatgagaatctcaccagatattgaaccttgtgtgagaaaagaagcattgaagctagcatttgatttgaaagctaacatgaaa 33562382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 243 - 339
Target Start/End: Original strand, 17060639 - 17060735
Alignment:
Q  243 tctttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacat 339  Q
    ||||| |||||||||||||||||| ||| ||||| || |||||| || |||||| ||| ||| | ||||||||||||| ||| ||||||||||||||    
T  17060639 tctttatgctagaacaactgatgataatgtcaccaaatattaaatcttgtgtaaaagacgaagctttgaagctagcacatgagttgaaagctaacat 17060735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 251 - 343
Target Start/End: Original strand, 45342966 - 45343058
Alignment:
Q  251 ctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatgaaa 343  Q
    ||||||||||||||||||||||  || |  ||||||||| |||||||||||||| |||| |||||||||||||| |||||||||||| |||||    
T  45342966 ctagaacaactgatgagaatcttgccaagtattaaaccttgtgtaagagaagaagcattcaagctagcacttgagttgaaagctaacgtgaaa 45343058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 44730156 - 44730204
Alignment:
Q  291 gtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacat 339  Q
    |||||||||| ||| | ||||||||||||| ||| ||||||||||||||    
T  44730156 gtgtaagagatgaagctttgaagctagcacatgagttgaaagctaacat 44730204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 142 - 341
Target Start/End: Original strand, 16114256 - 16114458
Alignment:
Q  142 agaatcatcagatccaacaaaagttgttttggatataatacaaaacccaattattccatggtgtaacgagggagaccatgctgt---tattgatggtagc 238  Q
    ||||||| |||||||| ||| | ||||||||||||||||||| |||||   || ||||  ||||||  |||||||| |||||||   ||||||||   ||    
T  16114256 agaatcagcagatccatcaagacttgttttggatataatacagaaccccggtactccactgtgtaagaagggagacaatgctgtgattattgatgaatgc 16114355  T
Q  239 agtgtctttctgctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaaca 338  Q
        ||| |||| ||||| ||||||||||||| ||||| |  ||||||||| ||||||||||| || ||||||||||||| |  |||||||||||| |||    
T  16114356 cacatctatctgttagaagaactgatgagaatatcaccaactattaaacctcgtgtaagagaaaaagcattgaagctagcgcgcgatttgaaagcttaca 16114455  T
Q  339 tga 341  Q
    |||    
T  16114456 tga 16114458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University