View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20626_low_18 (Length: 354)
Name: NF20626_low_18
Description: NF20626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20626_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 52584891 - 52584555
Alignment:
| Q |
1 |
tactagcttttttgctcaaatagtttcttcagtacgtaaaaaacagtgttgattcgattcgattcgattccccctttcactccttttctctttttccata |
100 |
Q |
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| T |
52584891 |
tactagcttttttgctcaaatagtttcttcagtacgtaaaaaacagtgttgattcgattcgattcgattccccctttcactccttttctccttttccata |
52584792 |
T |
|
| Q |
101 |
aaaatctctcttctttcactgttctagagagatccacatcacaaaactcacatgcttcatttttccaattgagttgttcccttaagggacacaatacaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52584791 |
aaaatctctcttctttcactgttctagagagatccacatcacaaaactcacatgcttcatttttccaattgagttgttcccttaagggacacaatacaat |
52584692 |
T |
|
| Q |
201 |
acaagtatagaactagtttattttttcaatcactttctctcagacnnnnnnngctagctacaattaatgatgtcaaactccatgacccatcaaaatcaat |
300 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52584691 |
acaagtatagaactagtttatttattcaatcactttctctcagacaaaaaaagctagctacaattaatgatgtcaaactccatgacccatcaaaatcaat |
52584592 |
T |
|
| Q |
301 |
ttgagaaccaagaactactaggtggtggttatgtttc |
337 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
52584591 |
ttgagaaccaagaactactaggtggtggttatgtttc |
52584555 |
T |
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