View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20626_low_21 (Length: 324)

Name: NF20626_low_21
Description: NF20626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20626_low_21
NF20626_low_21
[»] chr8 (6 HSPs)
chr8 (14-307)||(7035368-7035661)
chr8 (14-307)||(7028666-7028959)
chr8 (14-307)||(7078269-7078562)
chr8 (39-235)||(7021088-7021284)
chr8 (58-139)||(7086979-7087060)
chr8 (39-116)||(7069936-7070013)
[»] chr4 (8 HSPs)
chr4 (57-136)||(3821534-3821613)
chr4 (39-136)||(4003270-4003367)
chr4 (57-136)||(3811961-3812040)
chr4 (39-139)||(3953038-3953138)
chr4 (39-139)||(4220769-4220869)
chr4 (58-136)||(3988159-3988237)
chr4 (51-134)||(3916008-3916091)
chr4 (57-136)||(4011749-4011828)
[»] chr5 (1 HSPs)
chr5 (51-136)||(13399111-13399196)
[»] scaffold0070 (1 HSPs)
scaffold0070 (81-134)||(19738-19791)


Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 14 - 307
Target Start/End: Original strand, 7035368 - 7035661
Alignment:
Q  14 gagatgaaatatcagaacttcatacagcaattgaaaaatcattcatttcattggtcatattttcaccaaactttgcatcttcacattggtgtttggatga 113  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7035368 gagacgaaatatcagaacttcatacagcaattgaaaaatcattgatttcattggtcatattttcaccaaactttgcatcttcacattggtgtttggatga 7035467  T
Q  114 gcttgtgaaaatagtcgagtgcagagcaaattatggtagggttctaatgccagttttctaccaagtagagccctcagatgtacggcatcaaaatgggagt 213  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7035468 gcttgtgaaaatagtcgagtgcagagcaaattatggcaggattctattgccagttttctaccaagtagagccctcagatgtacggcatcaaaatgggagt 7035567  T
Q  214 tatagagatgcttttgctcaacatgnnnnnnngtataatttgaataaggtgctaagttggagatatgctttgaagcaatctgccaatatgtctg 307  Q
    |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7035568 tatagagatgcttttgctcaacatgaacaaaagtataatttgaataaggtgctaagttggagatatgctttgaagcaatctgccaatatgtctg 7035661  T

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Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 14 - 307
Target Start/End: Original strand, 7028666 - 7028959
Alignment:
Q  14 gagatgaaatatcagaacttcatacagcaattgaaaaatcattcatttcattggtcatattttcaccaaactttgcatcttcacattggtgtttggatga 113  Q
    |||| ||| |||||| | |||| | |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  7028666 gagacgaattatcagcaattcaaagagcaattgaaaaatcattgatttcattggtcatattttctccaaactttgcatcttcacattggtgtttggacga 7028765  T
Q  114 gcttgtgaaaatagtcgagtgcagagcaaattatggtagggttctaatgccagttttctaccaagtagagccctcagatgtacggcatcaaaatgggagt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |    
T  7028766 gcttgtgaaaatagtcgagtgcagagcaaattatggtagggttctaatgccagttttctaccaagtatatccctcagatgtacggcatcaaaatgggact 7028865  T
Q  214 tatagagatgcttttgctcaacatgnnnnnnngtataatttgaataaggtgctaagttggagatatgctttgaagcaatctgccaatatgtctg 307  Q
    |||||||||||||||||||||||||       ||||| ||   | ||||||||||| ||||||| |||||||||||||||||| ||||||||||    
T  7028866 tatagagatgcttttgctcaacatgaacaaaagtatagttcctacaaggtgctaagctggagatctgctttgaagcaatctgctaatatgtctg 7028959  T

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Target: chr8; HSP #3
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 14 - 307
Target Start/End: Complemental strand, 7078562 - 7078269
Alignment:
Q  14 gagatgaaatatcagaacttcatacagcaattgaaaaatcattcatttcattggtcatattttcaccaaactttgcatcttcacattggtgtttggatga 113  Q
    |||||||| |||||| | |||| | |||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| |||||||| |||| ||    
T  7078562 gagatgaattatcagcaattcaaagagcaattgaaaaatcattcatttcattggttatattctctccaaactttgcatcttcatattggtgtatggagga 7078463  T
Q  114 gcttgtgaaaatagtcgagtgcagagcaaattatggtagggttctaatgccagttttctaccaagtagagccctcagatgtacggcatcaaaatgggagt 213  Q
    ||||||||||||||| ||||| |||| ||| ||||||||| |||||||||||||||||||||||||||||||| ||| |||| || | |||||||||| |    
T  7078462 gcttgtgaaaatagttgagtgtagagaaaaatatggtaggattctaatgccagttttctaccaagtagagcccacagttgtaaggtaccaaaatgggatt 7078363  T
Q  214 tatagagatgcttttgctcaacatgnnnnnnngtataatttgaataaggtgctaagttggagatatgctttgaagcaatctgccaatatgtctg 307  Q
    |||||||||||||||||||||||||        |||| ||   | ||||| ||||| ||||||| |||||||||||||||||| ||||| ||||    
T  7078362 tatagagatgcttttgctcaacatgaacaaaattatagttcttacaaggttctaaggtggagatctgctttgaagcaatctgcaaatatttctg 7078269  T

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Target: chr8; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 39 - 235
Target Start/End: Original strand, 7021088 - 7021284
Alignment:
Q  39 agcaattgaaaaatcattcatttcattggtcatattttcaccaaactttgcatcttcacattggtgtttggatgagcttgtgaaaatagtcgagtgcaga 138  Q
    ||||||||||||||||||||||   ||||||||||| || ||||||||| ||| |||||||||||||||||||||||||||||||||||| || ||||||    
T  7021088 agcaattgaaaaatcattcattcatttggtcatattctctccaaacttttcatattcacattggtgtttggatgagcttgtgaaaatagttgattgcaga 7021187  T
Q  139 gcaaattatggtagggttctaatgccagttttctaccaagtagagccctcagatgtacggcatcaaaatgggagttatagagatgcttttgctcaac 235  Q
    ||||| |||| |||| ||||| |||||||||||||||||||||| ||  |||| ||||| ||||||| |||   ||||| ||||||||||| |||||    
T  7021188 gcaaaatatgataggattctattgccagttttctaccaagtagatcctacagaagtacgacatcaaactggtgcttataaagatgcttttgttcaac 7021284  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 139
Target Start/End: Complemental strand, 7087060 - 7086979
Alignment:
Q  58 atttcattggtcatattttcaccaaactttgcatcttcacattggtgtttggatgagcttgtgaaaatagtcgagtgcagag 139  Q
    |||||||| |||||||| || | ||||| ||| |||||| | |||||||||||||||||||| ||||| || ||||| ||||    
T  7087060 atttcattagtcatattctctcaaaactatgcttcttcaaaatggtgtttggatgagcttgtcaaaattgttgagtgtagag 7086979  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 7070013 - 7069936
Alignment:
Q  39 agcaattgaaaaatcattcatttcattggtcatattttcaccaaactttgcatcttcacattggtgtttggatgagct 116  Q
    ||||||||||| ||| |  |||||||| |||||||| || | ||||| ||| ||||||  ||||||||||||||||||    
T  7070013 agcaattgaaacatcttcaatttcattagtcatattctctcaaaactatgcttcttcatcttggtgtttggatgagct 7069936  T

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Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 3821613 - 3821534
Alignment:
Q  57 catttcattggtcatattttcaccaaactttgcatcttcacattggtgtttggatgagcttgtgaaaatagtcgagtgca 136  Q
    |||||||||||||||||| |||  ||||| ||| ||||||||||||||||| |||||||||||||||||| |||||||||    
T  3821613 catttcattggtcatattctcaaaaaactatgcttcttcacattggtgtttagatgagcttgtgaaaataatcgagtgca 3821534  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 4003367 - 4003270
Alignment:
Q  39 agcaattgaaaaatcattcatttcattggtcatattttcaccaaactttgcatcttcacattggtgtttggatgagcttgtgaaaatagtcgagtgca 136  Q
    ||||||||||  |||||||||||||||||||||||| |||  ||||| ||| ||||||||||||||||| || || |||||||||||| | |||||||    
T  4003367 agcaattgaaggatcattcatttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagaagaacttgtgaaaataattgagtgca 4003270  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 3812040 - 3811961
Alignment:
Q  57 catttcattggtcatattttcaccaaactttgcatcttcacattggtgtttggatgagcttgtgaaaatagtcgagtgca 136  Q
    |||||||||||||||||| |||  ||||| ||| ||||||||||||||||| |||||||||||||||||| | |||||||    
T  3812040 catttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagatgagcttgtgaaaataattgagtgca 3811961  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 139
Target Start/End: Original strand, 3953038 - 3953138
Alignment:
Q  39 agcaattgaaaaatcattcatttcattggtcatattttcaccaaactttgcatcttcacattggtgtttggatgagcttgtgaaaatagtcgagtgcaga 138  Q
    ||||||||||  ||| |||||||||||| ||||||| |||  ||||| ||| ||||||| ||||||||| || || |||||||||||| | |||||||||    
T  3953038 agcaattgaaggatcgttcatttcattgatcatattctcagaaaactatgcttcttcacgttggtgtttagaagaacttgtgaaaataattgagtgcaga 3953137  T
Q  139 g 139  Q
    |    
T  3953138 g 3953138  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 139
Target Start/End: Complemental strand, 4220869 - 4220769
Alignment:
Q  39 agcaattgaaaaatcattcatttcattggtcatattttcaccaaactttgcatcttcacattggtgtttggatgagcttgtgaaaatagtcgagtgcaga 138  Q
    ||||||||||  ||||| |||||||||||||||||| ||   ||||| ||| ||||||||||||||||| || || ||||| |||||| | |||||||||    
T  4220869 agcaattgaaggatcatccatttcattggtcatattctctgaaaactatgcttcttcacattggtgtttagaagaacttgtaaaaataattgagtgcaga 4220770  T
Q  139 g 139  Q
    |    
T  4220769 g 4220769  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 3988237 - 3988159
Alignment:
Q  58 atttcattggtcatattttcaccaaactttgcatcttcacattggtgtttggatgagcttgtgaaaatagtcgagtgca 136  Q
    ||||||||||||||||| |||  ||| | | | ||||||||||||||||| ||||| |||||||||||| |||||||||    
T  3988237 atttcattggtcatattctcaaaaaattattcttcttcacattggtgtttagatgaacttgtgaaaataatcgagtgca 3988159  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 134
Target Start/End: Original strand, 3916008 - 3916091
Alignment:
Q  51 atcattcatttcattggtcatattttcaccaaactttgcatcttcacattggtgtttggatgagcttgtgaaaatagtcgagtg 134  Q
    |||||||||||||||| ||||||| |||  ||||| ||| | |||||||||||||||  | || |||||||||||||| |||||    
T  3916008 atcattcatttcattgatcatattctcagaaaactatgcttgttcacattggtgtttaaaagaacttgtgaaaatagttgagtg 3916091  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 4011828 - 4011749
Alignment:
Q  57 catttcattggtcatattttcaccaaactttgcatcttcacattggtgtttggatgagcttgtgaaaatagtcgagtgca 136  Q
    |||||||||||||||||| |||  ||||| ||| | ||||||||||||||| || || |||| ||||||| | |||||||    
T  4011828 catttcattggtcatattctcataaaactatgcttgttcacattggtgtttagaagaacttgcgaaaataattgagtgca 4011749  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 136
Target Start/End: Complemental strand, 13399196 - 13399111
Alignment:
Q  51 atcattcatttcattggtcatattttcaccaaactttgcatcttcacattggtgtttggatgagcttgtgaaaatagtcgagtgca 136  Q
    |||||| ||||||||| ||||||| |||  ||||| ||| ||||||| ||||||||| || || |||||||||||| | |||||||    
T  13399196 atcatttatttcattgatcatattctcagaaaactatgcttcttcacgttggtgtttagaagaacttgtgaaaataattgagtgca 13399111  T

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Target: scaffold0070 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 19791 - 19738
Alignment:
Q  81 aaactttgcatcttcacattggtgtttggatgagcttgtgaaaatagtcgagtg 134  Q
    ||||| |||| ||||| | ||||||||||||||  |||||||||||||||||||    
T  19791 aaactatgcaacttcaaaatggtgtttggatgaagttgtgaaaatagtcgagtg 19738  T

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