View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20626_low_24 (Length: 307)
Name: NF20626_low_24
Description: NF20626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20626_low_24 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 13 - 289
Target Start/End: Original strand, 27205869 - 27206145
Alignment:
| Q |
13 |
aatatcaccaaaagtcaagatgatgtaaaaaagggagttaattttgcttatggtggtgcaactgcacttgatgtcaattatttcaaaggtggtagagtca |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27205869 |
aatatcaccaaaagtcaagatgatgtaaaaaagggagttaattttgcttatggcggtgcaactgcacttgatgtcaattatttcaaaggtggtagagtca |
27205968 |
T |
|
| Q |
113 |
ttaactctttgaatatgcaatttgattggtttaagaagcttaaaccctccttgtgtaaaactaaagaaggttttgtcctaactccctgcatattattttt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
27205969 |
ttaactctttgaatatgcaatttgattggtttaagaagcttaaaccctcatcgtgtaaaactaaagaaggttttgtcctaactccctgcatactattttt |
27206068 |
T |
|
| Q |
213 |
gtttgaaataaattgtttttcgtgtacatgactaacaaaacatttgttttgttgtgagttcacagaatgtgatagct |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27206069 |
gtttgaaataaattgtttttcgtgtacatgactaacaaaacatttgttttgttgtgagttcacagaatgtgatagct |
27206145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 10 - 289
Target Start/End: Complemental strand, 13003795 - 13003504
Alignment:
| Q |
10 |
aagaatatcaccaaaagtcaagatgatgtaaaaaagggagttaattttgcttatggtggtgcaactgcacttgatgtcaattatttcaaagg---tggta |
106 |
Q |
| |
|
|||||||||||||||| | ||||||| ||||||||||||||||||| ||||||| ||| ||||||||||||||||||| ||||| | || | || |
|
|
| T |
13003795 |
aagaatatcaccaaaatcccagatgatataaaaaagggagttaatttcgcttatgccggttcaactgcacttgatgtcaaatattttagtggcattagtg |
13003696 |
T |
|
| Q |
107 |
gagtcatt---------aactctttgaatatgcaatttgattggtttaagaagcttaaaccctccttgtgtaaaactaaagaaggttttgtcctaactcc |
197 |
Q |
| |
|
|||||| | | || || || ||||||||||||||||||||||||| |||||| ||| ||||||| ||||||||||||||||||| ||| |
|
|
| T |
13003695 |
gagtcagtgcaccaaaggaatcattagatgtgcaatttgattggtttaagaagctaaaacccgacttatgtaaaagcaaagaaggttttgtcctaaatcc |
13003596 |
T |
|
| Q |
198 |
ctgcatattatttttgtttgaaataaattgtttttcgtgtacatgactaacaaaacatttgttttgttgtgagttcacagaatgtgatagct |
289 |
Q |
| |
|
||||| |||||||||| ||| |||||| |||| || | || |||||||||||||| |||||||| || |||||||||||||||||| |||| |
|
|
| T |
13003595 |
ttgcatgttatttttgtgtgatataaatggtttatcatctatatgactaacaaaacttttgtttttttatgagttcacagaatgtgacagct |
13003504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 128 - 289
Target Start/End: Original strand, 31251921 - 31252082
Alignment:
| Q |
128 |
tgcaatttgattggtttaagaagcttaaaccctccttgtgtaaaactaaagaaggttttgtcctaactccctgcatattatttttgtttgaaataaattg |
227 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||| ||||||| |||||||||||||||||||| ||| | ||| |||||||||| ||| |||||| | |
|
|
| T |
31251921 |
tgcaatttgattggtttaagaagctaaaacccgacttatgtaaaagtaaagaaggttttgtcctaaatccttacatgttatttttgtgtgatataaatgg |
31252020 |
T |
|
| Q |
228 |
tttttcgtgtacatgactaacaaaacatttgttttgttgtgagttcacagaatgtgatagct |
289 |
Q |
| |
|
||| || | || |||||||||||||| |||||||| || |||||||||||||||||| |||| |
|
|
| T |
31252021 |
tttatcatctatatgactaacaaaacttttgtttttttatgagttcacagaatgtgacagct |
31252082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 10 - 289
Target Start/End: Complemental strand, 31094595 - 31094298
Alignment:
| Q |
10 |
aagaatatcaccaaaagtcaagatgatgtaaaaaagggagttaattttgcttatggtggtgcaactgcacttgatgtcaattatttcaaaggtggtagag |
109 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||||||| ||||||| ||| ||||||||||||| || | ||||||| ||| || ||| |
|
|
| T |
31094595 |
aagaatatcaccaaaagccaaggtgatgtaaaaaagggagttaatttcgcttatgccggttcaactgcacttgacatcgaatatttcagtggtagtggag |
31094496 |
T |
|
| Q |
110 |
tcatta---------------actctttgaatatgcaatttgattggtttaagaagcttaaaccctccttgtgtaaaactaaagaaggttttgtcctaac |
194 |
Q |
| |
|
|| || |||| || | | ||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
31094495 |
tctctacaccacagaaagataactcattaattgtgcaatttgattggtttaagaagctaaaacccttattgtgtaaaaacaaagaaggttttgtcctaac |
31094396 |
T |
|
| Q |
195 |
tccctgcatattatttttgtttgaaataaattgtttttcgtgtacatgactaacaaaacatttgtt---ttgttgtgagttcacagaatgtgatagct |
289 |
Q |
| |
|
||| ||| | |||||||||| ||| |||||| ||| || | | |||||||||||||| ||| || || |||||||||||||||||||||||||| |
|
|
| T |
31094395 |
tccttgcttgttatttttgtgtgatataaatgatttatcatcaatatgactaacaaaactttttttttcttcttgtgagttcacagaatgtgatagct |
31094298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 31251791 - 31251876
Alignment:
| Q |
10 |
aagaatatcaccaaaagtcaagatgatgtaaaaaagggagttaattttgcttatggtggtgcaactgcacttgatgtcaattattt |
95 |
Q |
| |
|
|||||||||||||||| | ||||||| ||||||||||||||||||| || |||| ||| ||||||||||||||||||| ||||| |
|
|
| T |
31251791 |
aagaatatcaccaaaatcccagatgatataaaaaagggagttaatttcgcctatgccggttcaactgcacttgatgtcaaatattt |
31251876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 214
Target Start/End: Original strand, 27228710 - 27228810
Alignment:
| Q |
114 |
taactctttgaatatgcaatttgattggtttaagaagcttaaaccctccttgtgtaaaactaaagaaggttttgtcctaactccctgcatattatttttg |
213 |
Q |
| |
|
|||||| || ||| |||||||||| ||||||||||| | ||||| || |||||||||| | |||||||||||||| ||||| | ||| ||||||||||| |
|
|
| T |
27228710 |
taactcattaaatgtgcaatttgaatggtttaagaatataaaaccatcattgtgtaaaagtgaagaaggttttgtcataactacttgcgtattatttttg |
27228809 |
T |
|
| Q |
214 |
t |
214 |
Q |
| |
|
| |
|
|
| T |
27228810 |
t |
27228810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University