View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20626_low_27 (Length: 259)

Name: NF20626_low_27
Description: NF20626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20626_low_27
NF20626_low_27
[»] chr6 (12 HSPs)
chr6 (1-238)||(3076640-3076877)
chr6 (8-221)||(34017973-34018190)
chr6 (1-232)||(24639084-24639315)
chr6 (37-214)||(10303157-10303336)
chr6 (9-220)||(11012350-11012563)
chr6 (31-231)||(18031725-18031924)
chr6 (6-231)||(34520345-34520572)
chr6 (96-214)||(19153385-19153505)
chr6 (33-228)||(31454032-31454229)
chr6 (44-223)||(32528906-32529087)
chr6 (172-220)||(11324385-11324433)
chr6 (97-161)||(22732646-22732710)
[»] chr3 (10 HSPs)
chr3 (1-235)||(19596118-19596355)
chr3 (26-228)||(42105671-42105874)
chr3 (4-228)||(7583049-7583276)
chr3 (97-231)||(43695689-43695825)
chr3 (6-135)||(44774492-44774621)
chr3 (164-214)||(35503851-35503901)
chr3 (165-202)||(34291890-34291927)
chr3 (172-220)||(14788785-14788833)
chr3 (172-202)||(20017555-20017585)
chr3 (172-214)||(44781791-44781833)
[»] chr5 (10 HSPs)
chr5 (1-238)||(6612274-6612514)
chr5 (8-221)||(42457623-42457839)
chr5 (7-214)||(14868175-14868383)
chr5 (4-150)||(33020451-33020597)
chr5 (88-231)||(17971903-17972048)
chr5 (164-232)||(4926715-4926783)
chr5 (120-211)||(16861371-16861464)
chr5 (164-214)||(31124187-31124237)
chr5 (165-214)||(7961270-7961319)
chr5 (172-220)||(704648-704696)
[»] chr1 (14 HSPs)
chr1 (8-226)||(3926557-3926775)
chr1 (111-238)||(27099657-27099786)
chr1 (29-223)||(33134289-33134485)
chr1 (29-223)||(44889059-44889255)
chr1 (6-108)||(34395413-34395515)
chr1 (97-219)||(51800469-51800593)
chr1 (29-223)||(29642016-29642212)
chr1 (131-202)||(5717195-5717268)
chr1 (11-76)||(27099594-27099659)
chr1 (97-214)||(9484769-9484888)
chr1 (172-220)||(46271930-46271978)
chr1 (170-217)||(34703613-34703660)
chr1 (165-202)||(38274214-38274251)
chr1 (170-214)||(31069569-31069613)
[»] chr2 (5 HSPs)
chr2 (80-238)||(9583461-9583621)
chr2 (9-212)||(32151497-32151702)
chr2 (120-223)||(5589520-5589625)
chr2 (165-214)||(38332172-38332221)
chr2 (172-220)||(2167625-2167673)
[»] chr7 (7 HSPs)
chr7 (83-217)||(10275402-10275538)
chr7 (2-153)||(16298761-16298904)
chr7 (165-217)||(8566898-8566950)
chr7 (101-214)||(37237859-37237974)
chr7 (172-219)||(16560010-16560057)
chr7 (172-219)||(16605605-16605652)
chr7 (172-214)||(14315525-14315567)
[»] chr4 (4 HSPs)
chr4 (31-212)||(19233359-19233542)
chr4 (29-231)||(40435051-40435252)
chr4 (172-220)||(52577902-52577950)
chr4 (165-226)||(5634764-5634825)
[»] chr8 (1 HSPs)
chr8 (29-214)||(1590293-1590480)


Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 3076877 - 3076640
Alignment:
Q  1 aaaaaacgaaagaaacaacagctagccatagcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttc 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||    
T  3076877 aaaaaacgaaagaaacaacagctagccatagcccaacattgccaggggactaagccaaaaaccatgataattgagggaaaattgaacaaattttttcctc 3076778  T
Q  101 aaccacgagtaggacagtaacttaattttatccactagacgcaaaatcgagcattctttacgagaaaatcatgttatttctttccttccatatttcccac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  3076777 aaccacgagtaggacagtaacttaattttatccactagacgcaaaatcgagcattctctacgagaaaatcattttatttctttccttccatatttcccac 3076678  T
Q  201 acattagcaaaccagatgacgttcaaaattgaatgtcg 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3076677 acattagcaaaccagatgacgttcaaaattgaatgtcg 3076640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 8 - 221
Target Start/End: Original strand, 34017973 - 34018190
Alignment:
Q  8 gaaagaaac-aacagctagccatagcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaaccac 106  Q
    ||||||||| |||| ||||||||| ||||||||||||||||||||||||||  | ||||  ||||||||||| |||||||||||||||| ||||||||||    
T  34017973 gaaagaaactaacaactagccataacccaacattgctaggggactaagccaccatccatggtaattgagggataattgaacaaatttttccttcaaccac 34018072  T
Q  107 gagtagga-cagtaacttaattttatccactagacgcaaaatcgagcattctttacga--gaaaatcatgttatttctttccttccatatttcccacaca 203  Q
    ||| ||||  |||||||||||||| ||||||| ||||||||||||||| ||||||| |   |||||| ||||||||||||||||||||||||||||||||    
T  34018073 gagaaggattagtaacttaattttgtccactaaacgcaaaatcgagcaatctttaccattaaaaatcctgttatttctttccttccatatttcccacaca 34018172  T
Q  204 ttagcaaaccagatgacg 221  Q
     |||| ||||| ||||||    
T  34018173 gtagcgaaccaaatgacg 34018190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 24639315 - 24639084
Alignment:
Q  1 aaaaaacgaaagaaacaacagctagccatagcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttc 100  Q
    |||||| |||||||| |||| |||| | |||||||||||||| ||||||||||||||  | |||| |||||||| |||||| ||||||||||| |  |||    
T  24639315 aaaaaatgaaagaaataacaactagtcgtagcccaacattgcaaggggactaagccaccagccatcataattgaaggaaaactgaacaaatttctctttc 24639216  T
Q  101 aaccacgagtaggacagtaacttaattttatccactaga--cgcaaaatcgagcattctttac--gagaaaatcatgttatttctttccttccatatttc 196  Q
    ||||||||| |||| |||| ||||||||| ||||||| |  | || |||||||||||||||||    ||||||| ||||||||||||| || ||||||||    
T  24639215 aaccacgagaaggaaagtagcttaattttgtccactataatcacataatcgagcattctttaccgttgaaaatcctgttatttctttcttttcatatttc 24639116  T
Q  197 ccacacattagcaaaccagatgacgttcaaaattga 232  Q
    ||||    |||||||||| ||||| ||||| |||||    
T  24639115 ccac----tagcaaaccaaatgacattcaatattga 24639084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 37 - 214
Target Start/End: Original strand, 10303157 - 10303336
Alignment:
Q  37 cattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacagtaacttaattttatccact 136  Q
    |||||| || |||||||||||  | |||| |||||||| |  ||| ||||||||||||   |||||||||||| |||| |||||||||||||||||||||    
T  10303157 cattgcgagaggactaagccaccagccatgataattgaagcgaaaatgaacaaattttgctttcaaccacgagaaggaaagtaacttaattttatccact 10303256  T
Q  137 agacgcaaaatcgagcattctttac--gagaaaatcatgttatttctttccttccatatttcccacacattagcaaacca 214  Q
    |  ||||  ||||||||||||||||    |||| || || |||||||||| |||||||||||||||||| ||||||||||    
T  10303257 aatcgcattatcgagcattctttaccgttgaaagtcctgctatttctttctttccatatttcccacacaatagcaaacca 10303336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 220
Target Start/End: Complemental strand, 11012563 - 11012350
Alignment:
Q  9 aaagaaacaacagctagccatagcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacga 108  Q
    ||||||| |||| |||| |||||||||| ||||| |||||| | |||||  ||||||  ||||||||  | || |||||||||||  |||||||||||||    
T  11012563 aaagaaataacaactagtcatagcccaaaattgcgaggggattcagccaccaaccatggtaattgagatataaatgaacaaatttcatcttcaaccacga 11012464  T
Q  109 gtaggacagtaacttaattttatccactagacgcaaaatcgagcattctttac--gagaaaatcatgttatttctttccttccatatttcccacacatta 206  Q
    | |||| |||||||| ||||| ||||  | || || ||| |||||||||||||    ||||||||||||||||||||| ||||| |||| ||||||| ||    
T  11012463 gaaggaaagtaactttattttgtccatcaaacacataattgagcattctttactgttgaaaatcatgttatttctttctttccacattttccacacagta 11012364  T
Q  207 gcaaaccagatgac 220  Q
    ||||| || |||||    
T  11012363 gcaaatcaaatgac 11012350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 231
Target Start/End: Original strand, 18031725 - 18031924
Alignment:
Q  31 gcccaacattgctaggggactaagccaaaaaccataataattga--gggaaaattgaacaaattttttcttcaaccacgagtaggacagtaacttaattt 128  Q
    |||||||||||||||||||||||||||  |||||| ||||||||  | |||  ||     ||||| | ||||||||||||| |||| ||  |||| ||||    
T  18031725 gcccaacattgctaggggactaagccaccaaccatgataattgatagcgaacctt-----aatttctccttcaaccacgagaaggaaagagactttattt 18031819  T
Q  129 tatccactagacgcaaaatcgagcattcttta-cga-gaaaatcatgttatttctttccttccatatttcccacacattagcaaaccagatgacgttcaa 226  Q
    | ||||||| | |||| ||| ||||||||||| ||  |||||| |||||||||||||| ||| |||||| ||||||  |||||||||| ||||| |||||    
T  18031820 tgtccactaaatgcaagatcaagcattctttagcgttgaaaattatgttatttctttctttctatattttccacactgtagcaaaccaaatgacattcaa 18031919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 231
Target Start/End: Original strand, 34520345 - 34520572
Alignment:
Q  6 acgaaagaaacaacagctagccatagcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaacca 105  Q
    |||||||||| |||| ||| |  |||||||||||||| || |||||||||||  ||||||  |||||||| || || |||| |||||| |  ||||||||    
T  34520345 acgaaagaaataacaactatcagtagcccaacattgcgagaggactaagccaccaaccatggtaattgagagataactgaataaatttctctttcaacca 34520444  T
Q  106 cgagtaggacagtaacttaattttatccactagacgcaaaatcgagcattcttta--cgagaaaatcatgttatttctttccttccatatttcccacaca 203  Q
    |||| | || |||  ||| ||||| ||||| |  |||| ||||||||||||||||     ||||||  ||||||||||||| ||  |||||||||||       
T  34520445 cgagaaagaaagtgcctttattttgtccacaatccgcataatcgagcattctttaactttgaaaatgctgttatttctttctttttatatttcccacgtg 34520544  T
Q  204 ttagcaaaccagatgacgttcaaaattg 231  Q
     |||||||||| |||||||| |||||||    
T  34520545 gtagcaaaccaaatgacgtttaaaattg 34520572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 96 - 214
Target Start/End: Original strand, 19153385 - 19153505
Alignment:
Q  96 tcttcaaccacgagtaggacagtaacttaattttatccactagacgcaaaatcgagcattctttac--gagaaaatcatgttatttctttccttccatat 193  Q
    |||||||||||||  |||| |||||||| ||||| ||||| | ||||||| ||||||| |||||||    ||||||| ||||||||||||| ||| | ||    
T  19153385 tcttcaaccacgaaaaggaaagtaactttattttgtccaccaaacgcaaagtcgagcactctttaccgttgaaaatcctgttatttctttctttctaaat 19153484  T
Q  194 ttcccacacattagcaaacca 214  Q
    |||||||||  ||||||||||    
T  19153485 ttcccacaccatagcaaacca 19153505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 33 - 228
Target Start/End: Original strand, 31454032 - 31454229
Alignment:
Q  33 ccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacagtaacttaattttatc 132  Q
    ||||||| || ||||||||||||||  |||||| |||||| |  || ||  |||||||||| | ||| ||||||||  |||| ||  |||| | ||| |     
T  31454032 ccaacatagcgaggggactaagccaccaaccatgataattaaaagagaaaagaacaaatttctcctttaaccacgaaaaggaaagagactttactttgtt 31454131  T
Q  133 cactagacgcaaaatcgagcattcttta-cga-gaaaatcatgttatttctttccttccatatttcccacacattagcaaaccagatgacgttcaaaa 228  Q
    ||||| ||||| ||||||||| |||||| | | ||||||| ||||||||||||| |||||||||||||| ||  |||||| ||| |||||||| ||||    
T  31454132 cactatacgcataatcgagcaatctttatctatgaaaatcctgttatttctttctttccatatttcccaaactgtagcaagccaaatgacgtttaaaa 31454229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 223
Target Start/End: Original strand, 32528906 - 32529087
Alignment:
Q  44 aggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacagtaacttaattttatccactagacgca 143  Q
    ||||||||||||||  | ||||| || ||||  || | |||| ||| ||| | ||||||||||||  |||| ||  |||| ||||| |||| ||  ||||    
T  32528906 aggggactaagccaccatccatagtagttgaaagagacttgagcaagtttctccttcaaccacgaaaaggaaagagactttattttgtccattatgcgca 32529005  T
Q  144 aaatcgagcattcttta--cgagaaaatcatgttatttctttccttccatatttcccacacattagcaaaccagatgacgtt 223  Q
     ||||||||| ||||||  |  |||||| |||||||||||||| |||||||||||| | ||  ||| |||||| ||||||||    
T  32529006 taatcgagcaatctttatccttgaaaattatgttatttctttctttccatatttcctaaactatagaaaaccaaatgacgtt 32529087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 11324433 - 11324385
Alignment:
Q  172 tgttatttctttccttccatatttcccacacattagcaaaccagatgac 220  Q
    ||||||||||||||||||| |||| ||||||  |||||||||| |||||    
T  11324433 tgttatttctttccttccaaattttccacaccgtagcaaaccaaatgac 11324385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 22732646 - 22732710
Alignment:
Q  97 cttcaaccacgagtaggacagtaacttaattttatccactagacgcaaaatcgagcattctttac 161  Q
    ||||||||||||| |||| ||| |||||| |||||||||||  ||||  ||| ||||||||||||    
T  22732646 cttcaaccacgagaaggaaagtgacttaactttatccactaaccgcattatccagcattctttac 22732710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 139; Significance: 8e-73; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 19596355 - 19596118
Alignment:
Q  1 aaaaaacgaaagaaacaacagctagccatagcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttc 100  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||| |||     
T  19596355 aaaaaacgaaagaaaccacagctagccatagtccaacattgctaggggactaagccaccaaccatgataattgagggaaaattgaacaaatttttcctta 19596256  T
Q  101 aaccacgagtaggacagtaacttaattttatccactagacgc-aaaatcgagcattcttta--cgagaaaatcatgttatttctttccttccatatttcc 197  Q
     ||||||||||||  |||||||||||||||||||||||| || ||||||||||| ||||||     ||||||| ||||||||||||||| ||||||||||    
T  19596255 caccacgagtaggttagtaacttaattttatccactagatgcaaaaatcgagcaatctttattgttgaaaatcctgttatttctttcctcccatatttcc 19596156  T
Q  198 cacacattagcaaaccagatgacgttcaaaattgaatg 235  Q
    || | | |||||||||||||||||||||||||||||||    
T  19596155 caaagagtagcaaaccagatgacgttcaaaattgaatg 19596118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 26 - 228
Target Start/End: Complemental strand, 42105874 - 42105671
Alignment:
Q  26 ccatagcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacagtaacttaa 125  Q
    ||||| ||||||| ||||| |||| |||||||  | |||| ||||||||||||||||||||||| ||||||||||||||||||| | || ||||||||||    
T  42105874 ccataacccaacactgctaagggattaagccaccatccatgataattgagggaaaattgaacaatttttttcttcaaccacgagaaagaaagtaacttaa 42105775  T
Q  126 ttttatccactagacgcaaaatcgagcattctttacga-gaaaatcatgttatttctttccttccatatttcccacacattagcaaaccagatgacgttc 224  Q
    |||| |||| || ||||| ||| | ||| ||||||| |  || ||||||||||||||||| || || ||||| |||||  |||||||||| |||||| ||    
T  42105774 ttttgtccattaaacgcataattgggcactctttaccattaagatcatgttatttctttcttttcaaatttctcacacggtagcaaaccatatgacgctc 42105675  T
Q  225 aaaa 228  Q
    ||||    
T  42105674 aaaa 42105671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 228
Target Start/End: Complemental strand, 7583276 - 7583049
Alignment:
Q  4 aaacgaaagaaacaacagctagccatagcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaac 103  Q
    |||| ||||||| | | |||||||||| |||| |||||| || ||| |||||||  ||||||  |||||||| || || |||||||||||  ||||||||    
T  7583276 aaacaaaagaaatatctgctagccataacccagcattgcgagaggattaagccaccaaccatggtaattgagagataaatgaacaaatttcatcttcaac 7583177  T
Q  104 cacgagtaggacagtaacttaattttatccactagacgcaaaatcgagcatt-ctttacga--gaaaatcatgttatttctttccttccatatttcccac 200  Q
    || ||| |||| |||||||| ||||| ||||| | ||||||||||||||||| ||||||    ||||||||| ||||||||||| ||||| | |||||||    
T  7583176 caggagaaggaaagtaactttattttgtccaccaaacgcaaaatcgagcatttctttacatttgaaaatcattttatttctttctttccacaattcccac 7583077  T
Q  201 acattagcaaaccagatgacgttcaaaa 228  Q
    ||| |||||||||| ||||| |||||||    
T  7583076 acaatagcaaaccaaatgacattcaaaa 7583049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 97 - 231
Target Start/End: Complemental strand, 43695825 - 43695689
Alignment:
Q  97 cttcaaccacgagtaggacagtaacttaattttatccactagacgcaaaatcgagcattctttacga--gaaaatcatgttatttctttccttccatatt 194  Q
    ||||||||||||| |||| ||  |||| ||||| ||||||| |||| |||||||||||||||||  |  |||||| ||| ||||||||||  ||||||||    
T  43695825 cttcaaccacgagaaggaaagagactttattttgtccactaaacgcgaaatcgagcattctttagtattgaaaattatgctatttctttctctccatatt 43695726  T
Q  195 tcccacacattagcaaaccagatgacgttcaaaattg 231  Q
    ||  ||||  |||||||||| |||||| |||||||||    
T  43695725 tcatacaccgtagcaaaccaaatgacgatcaaaattg 43695689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 135
Target Start/End: Original strand, 44774492 - 44774621
Alignment:
Q  6 acgaaagaaacaacagctagccatagcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaacca 105  Q
    |||||||||| ||||  || || |||||||||||||| ||||||||||||||  |||||| |||||||||||| |  | ||||  ||| | |||||||||    
T  44774492 acgaaagaaataacaattatccgtagcccaacattgcgaggggactaagccaccaaccatgataattgagggagatctaaacatttttctccttcaacca 44774591  T
Q  106 cgagtaggacagtaacttaattttatccac 135  Q
    |||| | || ||| |||| ||||| |||||    
T  44774592 cgagaaagaaagtgactttattttgtccac 44774621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 35503901 - 35503851
Alignment:
Q  164 gaaaatcatgttatttctttccttccatatttcccacacattagcaaacca 214  Q
    ||||||| ||||||||||||| |||||||||||||| ||| ||||||||||    
T  35503901 gaaaatcctgttatttctttctttccatatttcccaaacagtagcaaacca 35503851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 34291927 - 34291890
Alignment:
Q  165 aaaatcatgttatttctttccttccatatttcccacac 202  Q
    |||||||||||||||||||||||||| |||||||||||    
T  34291927 aaaatcatgttatttctttccttccaaatttcccacac 34291890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 14788833 - 14788785
Alignment:
Q  172 tgttatttctttccttccatatttcccacacattagcaaaccagatgac 220  Q
    ||||||||||||||||||| |||||||||||  |||||||||| |||||    
T  14788833 tgttatttctttccttccagatttcccacaccctagcaaaccaaatgac 14788785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 202
Target Start/End: Original strand, 20017555 - 20017585
Alignment:
Q  172 tgttatttctttccttccatatttcccacac 202  Q
    |||||||||||||||||||||||||||||||    
T  20017555 tgttatttctttccttccatatttcccacac 20017585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 44781791 - 44781833
Alignment:
Q  172 tgttatttctttccttccatatttcccacacattagcaaacca 214  Q
    ||||||||||||| ||||| |||||||||||| ||||||||||    
T  44781791 tgttatttctttctttccaaatttcccacacagtagcaaacca 44781833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 6612514 - 6612274
Alignment:
Q  1 aaaaaacgaaagaaacaacag-ctagccatagcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttctt 99  Q
    ||||||||||||||| ||||  |||| | |||||||||||||| ||||||||||||||  | ||||  ||||||| |||||| ||||||||||| | |||    
T  6612514 aaaaaacgaaagaaataacaaactagtcgtagcccaacattgcgaggggactaagccaccatccatggtaattgaaggaaaactgaacaaatttctcctt 6612415  T
Q  100 caaccacgagtaggacagtaacttaattttatccactagacgcaaaatcgagcattctttac--gagaaaatcatgttatttctttccttccatatttcc 197  Q
    |||||||||| |||| | ||||||||||||  ||||||  |||| |||||||||||||||||    ||||||| ||||||||||||| |||||||||||     
T  6612414 caaccacgagaaggaaaataacttaattttgcccactaatcgcataatcgagcattctttaccgttgaaaatcctgttatttctttctttccatatttct 6612315  T
Q  198 cacacattagcaaaccagatgacgttcaaaattgaatgtcg 238  Q
    |||||| |||||||||| ||||||||||| ||||| |||||    
T  6612314 cacacagtagcaaaccaaatgacgttcaatattgattgtcg 6612274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 42457839 - 42457623
Alignment:
Q  8 gaaagaaac-aacagctagccatagcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaaccac 106  Q
    ||||||||| ||||| || ||||| ||||||| ||| | ||||||||||||  | ||||  |||||||||||||||||||||||||||| ||||||||||    
T  42457839 gaaagaaactaacagttaaccataacccaacactgccaagggactaagccaccatccatggtaattgagggaaaattgaacaaatttttccttcaaccac 42457740  T
Q  107 gagtaggacagtaacttaattttatccactagacgcaaaatcgagcattctttacga--gaaaatcatgttatttctttccttccatatttcccacacat 204  Q
    ||| | || | |||||||||||| ||||||| ||||| ||| ||||| ||||||| |  ||| ||| | || ||||||| |||||| |||| |||||||     
T  42457739 gagaaagagaataacttaattttgtccactaaacgcataattgagcactctttaccattgaagatcctattgtttcttttcttccaaattttccacacag 42457640  T
Q  205 tagcaaaccagatgacg 221  Q
    |||||||||| ||||||    
T  42457639 tagcaaaccatatgacg 42457623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 7 - 214
Target Start/End: Original strand, 14868175 - 14868383
Alignment:
Q  7 cgaaagaaacaacagctagccatagcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaaccac 106  Q
    ||||||||| |||| | ||||||||||||||| ||| ||||||||||||||  | |||| |||||||| |||||| ||||||||||||  ||||||||||    
T  14868175 cgaaagaaataacaaccagccatagcccaacaatgcaaggggactaagccaccagccatgataattgaaggaaaaatgaacaaattttgccttcaaccac 14868274  T
Q  107 gagtaggacagtaacttaattttatccactagacgcaaaatcgagcattcttta-cgagaaaatcatgttatttctttccttccatatttcccacacatt 205  Q
     || |||| ||||| |||||||| |||||||   ||| ||| ||||||| |||| ||  |||||  ||||||||||||| || ||||||||| ||||  |    
T  14868275 aagaaggaaagtaatttaattttgtccactaattgcataattgagcattatttatcgttaaaattctgttatttctttcttttcatatttcctacacgat 14868374  T
Q  206 agcaaacca 214  Q
    |||||||||    
T  14868375 agcaaacca 14868383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 150
Target Start/End: Complemental strand, 33020597 - 33020451
Alignment:
Q  4 aaacgaaagaaacaacagctagccatagcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaac 103  Q
    |||| |||||||  |||||||||  |||| || |||||| |||||| |||||||  || ||| ||||||||| || || ||||||| |||  ||||||||    
T  33020597 aaacaaaagaaattacagctagcagtagctcagcattgcgaggggattaagccactaatcatgataattgagagataaatgaacaagtttcatcttcaac 33020498  T
Q  104 cacgagtaggacagtaacttaattttatccactagacgcaaaatcga 150  Q
    |||||| |||| |||||||||||||||||||| | ||||||||||||    
T  33020497 cacgagaaggaaagtaacttaattttatccaccaaacgcaaaatcga 33020451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 88 - 231
Target Start/End: Original strand, 17971903 - 17972048
Alignment:
Q  88 aaattttttcttcaaccacgagtaggacagtaacttaattttatccactagacgcaaaatcgagcattctttacga--gaaaatcatgttatttctttcc 185  Q
    |||||| || ||||||||||| || || ||| |||| ||||| ||||| |  |||| |||||||| |||||||  |  | |||| ||||||||||||||     
T  17971903 aaatttctttttcaaccacgaataagaaagtgactttattttgtccacaatccgcataatcgagctttctttatcattggaaattatgttatttctttct 17972002  T
Q  186 ttccatatttcccacacattagcaaaccagatgacgttcaaaattg 231  Q
    |||||||||||||||||| |||||||||| |||||||| |||||||    
T  17972003 ttccatatttcccacacagtagcaaaccaaatgacgtttaaaattg 17972048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 4926783 - 4926715
Alignment:
Q  164 gaaaatcatgttatttctttccttccatatttcccacacattagcaaaccagatgacgttcaaaattga 232  Q
    ||||||||||||||||||||| ||||| ||||| |||||| |||||||||| |||||||| ||||||||    
T  4926783 gaaaatcatgttatttctttctttccaaatttctcacacagtagcaaaccaaatgacgtttaaaattga 4926715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 211
Target Start/End: Original strand, 16861371 - 16861464
Alignment:
Q  120 acttaattttatccactagacgcaaaatcgagcattctttacga--gaaaatcatgttatttctttccttccatatttcccacacattagcaaa 211  Q
    ||||||| ||||||||||  ||||| ||||| |||| ||||  |  ||| ||||||||||||||||| |||||||||||||||||| |||||||    
T  16861371 acttaatcttatccactaaccgcaatatcgaacattgtttatcattgaagatcatgttatttctttctttccatatttcccacacactagcaaa 16861464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 31124237 - 31124187
Alignment:
Q  164 gaaaatcatgttatttctttccttccatatttcccacacattagcaaacca 214  Q
    ||||||| ||||||||||||| ||||| |||||||||||| ||||||||||    
T  31124237 gaaaatcctgttatttctttctttccagatttcccacacagtagcaaacca 31124187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 7961270 - 7961319
Alignment:
Q  165 aaaatcatgttatttctttccttccatatttcccacacattagcaaacca 214  Q
    ||||| ||||| ||||||||||||||||||||||||| | | ||||||||    
T  7961270 aaaattatgttgtttctttccttccatatttcccacatagtcgcaaacca 7961319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 704648 - 704696
Alignment:
Q  172 tgttatttctttccttccatatttcccacacattagcaaaccagatgac 220  Q
    ||||||||||||||||||||||||| || ||  |||||||||| |||||    
T  704648 tgttatttctttccttccatatttctcaaactgtagcaaaccaaatgac 704696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 3926557 - 3926775
Alignment:
Q  8 gaaagaaacaacagctagccatagcccaacattgctaggggactaagccaaaaaccataataatt-gagggaaaattgaacaaattttttcttcaaccac 106  Q
    |||||||  ||||| || ||||||||||||||||||||||||||||||||  |||||| |||||| ||| |||||||||| |   |||| ||||||||||    
T  3926557 gaaagaataaacagttaaccatagcccaacattgctaggggactaagccaccaaccatgataatttgagagaaaattgaaaa---ttttccttcaaccac 3926653  T
Q  107 gagtaggacagtaacttaattttatccactagacgcaaaatcgagcattctttacga--gaaaatcatgttatttctttccttccatatttcccacacat 204  Q
    ||| |||| |||| ||||||||| ||||||  ||||||||||||||| ||||||| |  ||||||  ||||||||||||| ||||| |||||||||||||    
T  3926654 gagaaggaaagtagcttaattttgtccactcaacgcaaaatcgagcactctttaccattgaaaattctgttatttctttctttccaaatttcccacacat 3926753  T
Q  205 tagcaaaccagatgacgttcaa 226  Q
    || ||||||| |||||| ||||    
T  3926754 taacaaaccaaatgacgctcaa 3926775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 111 - 238
Target Start/End: Original strand, 27099657 - 27099786
Alignment:
Q  111 aggacagtaacttaattttatccactagacgcaaaatcgagcattctttacga--gaaaatcatgttatttctttccttccatatttcccacacattagc 208  Q
    ||||| |||||| |||||| |||||||  |||||||||||||| ||||||  |  ||||||| ||||||||||||| |||||||||| ||||||| ||||    
T  27099657 aggacggtaactaaattttgtccactaatcgcaaaatcgagcaatctttagcattgaaaatcttgttatttctttctttccatattttccacacagtagc 27099756  T
Q  209 aaaccagatgacgttcaaaattgaatgtcg 238  Q
    |||||| |||| | |||||| |||||||||    
T  27099757 aaaccaaatgatgctcaaaaatgaatgtcg 27099786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 223
Target Start/End: Complemental strand, 33134485 - 33134289
Alignment:
Q  29 tagcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacagtaacttaattt 128  Q
    ||||||||||| || ||||||||||||||  ||||||  |||||||  || ||||||| ||| || | ||||||||||||  |||| ||  |||| ||||    
T  33134485 tagcccaacatagcgaggggactaagccaccaaccatggtaattgaaagagaattgaaaaaaattctccttcaaccacgaaaaggaaagagactttattt 33134386  T
Q  129 tatccactagacgcaaaatcgagcattcttt--acgagaaaatcatgttatttctttccttccatatttcccacacattagcaaaccagatgacgtt 223  Q
    | |||||||  |||| |||||||||||||||   |  ||||||  | ||||||||||| |||||||||||||| ||| |||||||||| ||| ||||    
T  33134385 tgtccactattcgcataatcgagcattctttgaccttgaaaattctattatttctttctttccatatttcccaaacagtagcaaaccaaatggcgtt 33134289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 223
Target Start/End: Original strand, 44889059 - 44889255
Alignment:
Q  29 tagcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacagtaacttaattt 128  Q
    ||||||||||| || ||||||||||||||  ||||||  |||||||  || ||||||| ||| || | ||||||||||||  |||| ||  |||| ||||    
T  44889059 tagcccaacatagcgaggggactaagccaccaaccatggtaattgaatgagaattgaaaaaaattctccttcaaccacgaaaaggaaagagactttattt 44889158  T
Q  129 tatccactagacgcaaaatcgagcattcttt--acgagaaaatcatgttatttctttccttccatatttcccacacattagcaaaccagatgacgtt 223  Q
    | |||| ||  |||| |||||||||||||||   |  ||||||  ||||||||||||| |||||||||||||| ||| |||||||||| ||| ||||    
T  44889159 tgtccattattcgcataatcgagcattctttgaccttgaaaattctgttatttctttctttccatatttcccaaacagtagcaaaccaaatggcgtt 44889255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 108
Target Start/End: Original strand, 34395413 - 34395515
Alignment:
Q  6 acgaaagaaacaacagctagccatagcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaacca 105  Q
    |||||||||| |||| ||| || |||||||||||||  |||||||||| |||  |||||| ||||||||| || || ||||||||||| | |||||||||    
T  34395413 acgaaagaaataacaactatccgtagcccaacattgtgaggggactaatccaccaaccatgataattgagagagaactgaacaaatttctccttcaacca 34395512  T
Q  106 cga 108  Q
    |||    
T  34395513 cga 34395515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 219
Target Start/End: Complemental strand, 51800593 - 51800469
Alignment:
Q  97 cttcaaccacgagtaggacagtaacttaattttatccactagacgcaaaatcgagcattctttacga--gaaaatcatgttatttctttccttccatatt 194  Q
    ||||||||||   ||||| || ||||||||||| |||||||   |||| |||||||| ||||||  |  ||||||| ||||||||||||| |||||||||    
T  51800593 cttcaaccacctataggaaagcaacttaattttgtccactaacagcaatatcgagcactctttatcattgaaaatcctgttatttctttctttccatatt 51800494  T
Q  195 tcccacacattagcaaaccagatga 219  Q
    ||||||||  |||||||||| ||||    
T  51800493 tcccacactatagcaaaccaaatga 51800469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 223
Target Start/End: Original strand, 29642016 - 29642212
Alignment:
Q  29 tagcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacagtaacttaattt 128  Q
    |||||||| || || |||||| |||||||  |||| |  |||||||  || ||||||| |||||| ||||| ||||||||  |||| ||  |||| ||||    
T  29642016 tagcccaagatagcgaggggattaagccaccaaccttggtaattgaaagagaattgaataaatttcttctttaaccacgaaaaggaaagagactttattt 29642115  T
Q  129 tatccactagacgcaaaatcgagcattcttt--acgagaaaatcatgttatttctttccttccatatttcccacacattagcaaaccagatgacgtt 223  Q
    ||||||||| || || ||||||||| |||||   |  ||||||  |||| |||||||| |||||||||||||| | | |||||||||| | ||||||    
T  29642116 tatccactatacacataatcgagcaatctttgaccttgaaaattctgttgtttctttctttccatatttcccaaatagtagcaaaccaaaggacgtt 29642212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 202
Target Start/End: Complemental strand, 5717268 - 5717195
Alignment:
Q  131 tccactagacgcaaaatcgagcattctttacga--gaaaatcatgttatttctttccttccatatttcccacac 202  Q
    |||||||  |||||||||||||| ||||||| |  ||||||||| ||||||||||| |||||||||| ||||||    
T  5717268 tccactaatcgcaaaatcgagcactctttaccattgaaaatcatattatttctttctttccatattttccacac 5717195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 27099594 - 27099659
Alignment:
Q  11 agaaacaacagctagccatagcccaacattgctaggggactaagccaaaaaccataataattgagg 76  Q
    |||||||||| |||| || |||||||||||||||||||| |||||||  ||||||  |||||||||    
T  27099594 agaaacaacaactagtcacagcccaacattgctaggggaataagccaccaaccatggtaattgagg 27099659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 214
Target Start/End: Complemental strand, 9484888 - 9484769
Alignment:
Q  97 cttcaaccacgagtaggacagtaacttaattttatccactagacgcaaaatcgagcattctttacga--gaaaatcatgttatttctttccttccatatt 194  Q
    |||||||||| || |||| | | ||||||| ||||| ||||   |||| ||||| |||||||||| |  ||| ||| ||||||||||||| || || |||    
T  9484888 cttcaaccacaagaaggaaattgacttaatcttatctactatttgcaatatcgaacattctttaccattgaatatcttgttatttctttcttttcaaatt 9484789  T
Q  195 tcccacacattagcaaacca 214  Q
    ||||||||| ||||||||||    
T  9484788 tcccacacactagcaaacca 9484769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 46271978 - 46271930
Alignment:
Q  172 tgttatttctttccttccatatttcccacacattagcaaaccagatgac 220  Q
    ||||||||||||| ||||| |||||||||||| |||||||||| |||||    
T  46271978 tgttatttctttctttccagatttcccacacagtagcaaaccaaatgac 46271930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 217
Target Start/End: Original strand, 34703613 - 34703660
Alignment:
Q  170 catgttatttctttccttccatatttcccacacattagcaaaccagat 217  Q
    ||||||||||||||| |||||||||||||| ||| ||||| |||||||    
T  34703613 catgttatttctttctttccatatttcccagacagtagcataccagat 34703660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 202
Target Start/End: Original strand, 38274214 - 38274251
Alignment:
Q  165 aaaatcatgttatttctttccttccatatttcccacac 202  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  38274214 aaaatcctgttatttctttccttccaaatttcccacac 38274251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 31069613 - 31069569
Alignment:
Q  170 catgttatttctttccttccatatttcccacacattagcaaacca 214  Q
    |||||||| |||||| ||||| |||||||||||| ||||||||||    
T  31069613 catgttatatctttctttccaaatttcccacacaatagcaaacca 31069569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 80 - 238
Target Start/End: Original strand, 9583461 - 9583621
Alignment:
Q  80 aattgaacaaattttttcttcaaccacgagtaggacagtaacttaattttatccactagacgcaaaatcgagcattctttacga--gaaaatcatgttat 177  Q
    |||||||||||||||| ||||||||| ||| |||| || | ||||||||| |||||||  |||||||||||||| ||||||| |  ||||||| ||||||    
T  9583461 aattgaacaaatttttccttcaaccaagagaaggaaaggagcttaattttgtccactaatcgcaaaatcgagcaatctttaccattgaaaatcctgttat 9583560  T
Q  178 ttctttccttccatatttcccacacattagcaaaccagatgacgttcaaaattgaatgtcg 238  Q
    ||||||| ||  |||||||||||||| |||||||||| |||||| | |||| |||||||||    
T  9583561 ttctttctttttatatttcccacacagtagcaaaccaaatgacgctaaaaaatgaatgtcg 9583621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 212
Target Start/End: Complemental strand, 32151702 - 32151497
Alignment:
Q  9 aaagaaacaacagctagccatagcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacga 108  Q
    ||||||| |||||||||||||||||||| ||||| |||||| | || ||  ||| ||  |||||||  || || |||||||||||  |||||||||| ||    
T  32151702 aaagaaataacagctagccatagcccaaaattgcgaggggattcagtcaccaactatggtaattgaaagataaatgaacaaatttcatcttcaaccaaga 32151603  T
Q  109 gtaggacagtaacttaattttatccactagacgcaaaatcgagcattctttac--gagaaaatcatgttatttctttccttccatatttcccacacatta 206  Q
    | |||| |||| ||| ||||| ||||| | || ||||||||||||||||||||    ||||||| ||||||||||||| ||||| |||||||||||| ||    
T  32151602 gaaggaaagtagctttattttgtccaccaaacacaaaatcgagcattctttactgttgaaaatcttgttatttctttctttccacatttcccacacagta 32151503  T
Q  207 gcaaac 212  Q
     |||||    
T  32151502 ccaaac 32151497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 223
Target Start/End: Complemental strand, 5589625 - 5589520
Alignment:
Q  120 acttaattttatccactagacgcaaaatcgagcattcttta--cgagaaaatcatgttatttctttccttccatatttcccacacattagcaaaccagat 217  Q
    |||| ||||| |||||||  |||| |||||| |||||||||  |  ||||||  ||||||||||||| |||||| ||||||| ||| |||||||||| ||    
T  5589625 acttcattttgtccactattcgcataatcgaacattctttaaccttgaaaattttgttatttctttctttccatctttcccaaacagtagcaaaccaaat 5589526  T
Q  218 gacgtt 223  Q
    ||||||    
T  5589525 gacgtt 5589520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 38332172 - 38332221
Alignment:
Q  165 aaaatcatgttatttctttccttccatatttcccacacattagcaaacca 214  Q
    ||||||||||| |||||||| ||||| |||| ||||||| ||||||||||    
T  38332172 aaaatcatgttgtttctttctttccaaattttccacacagtagcaaacca 38332221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 2167625 - 2167673
Alignment:
Q  172 tgttatttctttccttccatatttcccacacattagcaaaccagatgac 220  Q
    ||||||| ||||| |||||||||||||| |||  |||||||||||||||    
T  2167625 tgttattcctttctttccatatttcccaaacagcagcaaaccagatgac 2167673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 83 - 217
Target Start/End: Complemental strand, 10275538 - 10275402
Alignment:
Q  83 tgaacaaattttttcttcaaccacgagtaggacagtaacttaattttatccactagacgcaaaatcgagcattctttac--gagaaaatcatgttatttc 180  Q
    |||||||||||  | |||||||||||| |||| |||| |||||||||||||||||  ||||  ||||||||||||||||    |||| ||||||||||||    
T  10275538 tgaacaaatttcgtattcaaccacgagaaggaaagtagcttaattttatccactaatcgcattatcgagcattctttactgttgaaagtcatgttatttc 10275439  T
Q  181 tttccttccatatttcccacacattagcaaaccagat 217  Q
    |||| ||||||||||| || ||| ||| |||||||||    
T  10275438 tttctttccatatttctcaaacaatagtaaaccagat 10275402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 153
Target Start/End: Complemental strand, 16298904 - 16298761
Alignment:
Q  2 aaaaacgaaagaaacaacagctagccatagcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttctt-c 100  Q
    ||||||||||||||||||||||||||||||||||||||   || | || |||||||  |||||| |||| |||||   ||||       ||||||||| |    
T  16298904 aaaaacgaaagaaacaacagctagccatagcccaacatatataagagattaagccaccaaccatgataactgagg---aattt------ttttttctttc 16298814  T
Q  101 aaccacgagtaggacagtaacttaattttatccactagacgcaaaatcgagca 153  Q
    |||||||| |||||||||||||||||||| |||||||||| ||| ||||||||    
T  16298813 aaccacgaataggacagtaacttaattttgtccactagacacaagatcgagca 16298761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 8566898 - 8566950
Alignment:
Q  165 aaaatcatgttatttctttccttccatatttcccacacattagcaaaccagat 217  Q
    ||||||||| |||||||||||||||| |||||||| ||  |||||||||||||    
T  8566898 aaaatcatgctatttctttccttccaaatttcccaaactgtagcaaaccagat 8566950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 214
Target Start/End: Original strand, 37237859 - 37237974
Alignment:
Q  101 aaccacgagtaggacagtaacttaattttatccactagacgcaaaatcgagcattctttacga--gaaaatcatgttatttctttccttccatatttccc 198  Q
    |||||| ||||||| || ||||||||||| |||||||   ||   |||||||| ||||||| |  ||| ||  ||||||||||||| || ||||||||||    
T  37237859 aaccaccagtaggaaagcaacttaattttgtccactaacagcgttatcgagcactctttaccattgaagatactgttatttctttctttacatatttccc 37237958  T
Q  199 acacattagcaaacca 214  Q
    ||||| ||||||||||    
T  37237959 acacagtagcaaacca 37237974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 16560057 - 16560010
Alignment:
Q  172 tgttatttctttccttccatatttcccacacattagcaaaccagatga 219  Q
    ||||||||||||| |||||||||||||||||  |||||||||| ||||    
T  16560057 tgttatttctttctttccatatttcccacaccgtagcaaaccaaatga 16560010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 16605605 - 16605652
Alignment:
Q  172 tgttatttctttccttccatatttcccacacattagcaaaccagatga 219  Q
    ||||||||||||| |||||||||||||||||  |||||||||| ||||    
T  16605605 tgttatttctttctttccatatttcccacaccgtagcaaaccaaatga 16605652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 14315525 - 14315567
Alignment:
Q  172 tgttatttctttccttccatatttcccacacattagcaaacca 214  Q
    ||||||||||||||||||| ||||||||| || ||||||||||    
T  14315525 tgttatttctttccttccaaatttcccacgcagtagcaaacca 14315567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 31 - 212
Target Start/End: Complemental strand, 19233542 - 19233359
Alignment:
Q  31 gcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacagtaacttaatttta 130  Q
    |||||||| ||  ||||||||||||||  | ||||  |||||||  | ||| ||||||||||||  ||||||||||||| |||| |||||||||||||||    
T  19233542 gcccaacactgtgaggggactaagccaccatccatggtaattgaatggaaaatgaacaaattttaccttcaaccacgagaaggaaagtaacttaatttta 19233443  T
Q  131 tccactagacgcaaaatcgagcattctttac--gagaaaatcatgttatttctttccttccatatttcccacacattagcaaac 212  Q
    |||||||  | ||  ||||||||||||||||    |||| |||| |||||| |||| ||||||||||  |||||| ||||||||    
T  19233442 tccactaatcacattatcgagcattctttaccgttgaaagtcatattatttatttctttccatatttttcacacagtagcaaac 19233359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 231
Target Start/End: Complemental strand, 40435252 - 40435051
Alignment:
Q  29 tagcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacagtaacttaattt 128  Q
    |||||||||||||| || |||||||| ||  ||||||  |||||||| ||||  ||||   |||| | |||||||||||| || || ||| |||| ||||    
T  40435252 tagcccaacattgcgagaggactaagtcaccaaccatggtaattgagagaaatctgaa---atttctccttcaaccacgaataagaaagtgactttattt 40435156  T
Q  129 tatccactagacgcaaaatcgagcattctttacga--gaaaatcatgttatttctttccttccatatttcccacacattagcaaaccagatgacgttcaa 226  Q
    | ||||| |   ||| |||||||| |||||||  |  |||||| |||||||||||||| ||||| |||||||||| | |||||||||| | |||||| ||    
T  40435155 tgtccacaatgtgcataatcgagctttctttatcattgaaaattatgttatttctttctttccagatttcccacataatagcaaaccaaaagacgtttaa 40435056  T
Q  227 aattg 231  Q
    |||||    
T  40435055 aattg 40435051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 52577950 - 52577902
Alignment:
Q  172 tgttatttctttccttccatatttcccacacattagcaaaccagatgac 220  Q
    ||||||||||||||||||| |||||||||||  |||||||||| |||||    
T  52577950 tgttatttctttccttccagatttcccacaccgtagcaaaccaaatgac 52577902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 5634825 - 5634764
Alignment:
Q  165 aaaatcatgttatttctttccttccatatttcccacacattagcaaaccagatgacgttcaa 226  Q
    |||||| ||||||||||||| ||||| | |||||||||| | |||||||| ||||| |||||    
T  5634825 aaaatcctgttatttctttctttccacaattcccacacagttgcaaaccaaatgacattcaa 5634764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 214
Target Start/End: Complemental strand, 1590480 - 1590293
Alignment:
Q  29 tagcccaacattgctaggggactaagccaaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacagtaacttaattt 128  Q
    ||||||||||| || ||||||||||||||  ||||||  |||||||  || ||||||| ||| || | ||||||||||||  |||| ||  |||| ||||    
T  1590480 tagcccaacatagcgaggggactaagccaccaaccatggtaattgaaagagaattgaaaaaaattctccttcaaccacgaaaaggaaagagactttattt 1590381  T
Q  129 tatccactagacgcaaaatcgagcattcttt--acgagaaaatcatgttatttctttccttccatatttcccacacattagcaaacca 214  Q
    | |||||||  |||| |||||||||||||||   |  |||| |  ||||||||||||  |||||||||||||| ||| ||||||||||    
T  1590380 tgtccactattcgcataatcgagcattctttgatcttgaaacttctgttatttctttttttccatatttcccaaacagtagcaaacca 1590293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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