View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20626_low_3 (Length: 623)
Name: NF20626_low_3
Description: NF20626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20626_low_3 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 537; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 16 - 623
Target Start/End: Complemental strand, 34987094 - 34986486
Alignment:
| Q |
16 |
caatcataactctaatatcttctgaaccagcaggaactggatctagtcgcatccatggattgttagtcgtggaactaagattggcacaaaatcttctcct |
115 |
Q |
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|||||||||||||||||||| ||||||||||||||| ||| ||||||| ||||||||||| ||||| ||||||| |||||||||||| ||||||||| | |
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| T |
34987094 |
caatcataactctaatatctgctgaaccagcaggaagaggagctagtcgaatccatggattcttagtggtggaaccaagattggcacagaatcttctcat |
34986995 |
T |
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| Q |
116 |
cattctttcagccaatttcaataaacttgtcctcccaatttgtggtataagaactgtttgtatcaaaagagacaaatacaagtaatggaagcaattaaaa |
215 |
Q |
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|||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34986994 |
cattctatcggccaatttcaagaaacttgtcctcccaatttgtggtataagaactgtttgtatcaaaagagacaaatacaagtaatggaagcaattaaaa |
34986895 |
T |
|
| Q |
216 |
tgcgttattaagataaatacaacgacttaaataacattaagtcgttgcggacttgctattaaaatctcacattatattactaatgtgacaatgtgtaaaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34986894 |
tgcgttattaagataaatacaacgacttaaataacattaagtcgttgcggacttgctattaaaatctcacattatattactaatgtaacaatgtgtaaaa |
34986795 |
T |
|
| Q |
316 |
caaataagttatttcacgtctcaaaatttggaaaaatttcttcttcttccatctttaggtatgcatgttgagttaaattttgtatgagacaatattctta |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34986794 |
caaataagttatttcacgtctcaaaatttggaaaaatttcttcttcttccatctttaggtatgcatgatgagttaaattttgtatgagacaatattctta |
34986695 |
T |
|
| Q |
416 |
ttagaaatatatttaacctcctatcaattgtttctcaagcagtatgttcttaattagctctgcatatgcactcttgtgtatgagctctc-cccagctttc |
514 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34986694 |
ttagaaatatatttaacctcctatcaattgtttctcaagcagtatgttcttaattagctctgcatatgcactcttgtgtatgagctctctcccagctttc |
34986595 |
T |
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| Q |
515 |
taggttctctaaacatagggttcatatttttcgcaagttgagtttagataggcttttgcctaggtcaacctaagccctaggagggccataatagatgttg |
614 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34986594 |
taggttctccaaacatagggttcatatttttcgcaagttgagtttagataggcttttgcctaggtcaacctaagccctaggagggccataatagatgttg |
34986495 |
T |
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| Q |
615 |
gtgttcatt |
623 |
Q |
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| T |
34986494 |
gtgttcatt |
34986486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 234
Target Start/End: Complemental strand, 34995511 - 34995285
Alignment:
| Q |
8 |
attattctcaatcataactctaatatcttctgaaccagcaggaactggatctagtcgcatccatggattgttagtcgtggaactaagattggcacaaaat |
107 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34995511 |
attattcccaatcataactctaatatcttctgaaccagcaggaactggatctagtcgcatccatggattgttagttgtggaactaagattggcacaaaat |
34995412 |
T |
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| Q |
108 |
cttctcctcattctttcagccaatttcaataaacttgtcctcccaatttgtggtataagaactgtttgtatcaaaagagacaaatacaagtaatggaagc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || | ||||||| ||| |
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| T |
34995411 |
cttctcctcattctttcagccaatttcaataaacttgtcctcccaatttgtggtataagaactgtttgtatcaaaagaaacaagtatacgtaatggtagc |
34995312 |
T |
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| Q |
208 |
aattaaaatgcgttattaagataaata |
234 |
Q |
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| T |
34995311 |
aattaaaattctttattgagataaata |
34995285 |
T |
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Back To:
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