View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20626_low_30 (Length: 253)
Name: NF20626_low_30
Description: NF20626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20626_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 34987097 - 34987322
Alignment:
| Q |
11 |
aatgatatggctggtagtacaaatgagcctattggaacatcactgnnnnnnngtactactctttggcttaatgtctccccaaatcgattattcaacttcc |
110 |
Q |
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| T |
34987097 |
aatgatatggctggtagtacaaatgagcctattggaacatcactgtttttttgtactactctttggcttaatgtctccccaaatcgattattcaacttcc |
34987196 |
T |
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| Q |
111 |
ttcggcatgagaaatccagaagcaaggtatgccctaacacttttttcttattaaaggcatagcaggacatgttctaacacatttacattctttgttttta |
210 |
Q |
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| T |
34987197 |
ttcggcatgagaaatccagaagcaaggtatgccctaacacttttttcttattaaaggcatagcaggacatgttctaacacatttacattctttgttttta |
34987296 |
T |
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| Q |
211 |
ttgaataattatagtgggataaacat |
236 |
Q |
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|||||||||||||||||||||||||| |
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| T |
34987297 |
ttgaataattatagtgggataaacat |
34987322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 63 - 234
Target Start/End: Original strand, 34995540 - 34995715
Alignment:
| Q |
63 |
gtactactctttggcttaatgtctccccaaatcgattattcaacttccttcggcatgagaaatccagaagcaaggtatgccctaacacttttttcttatt |
162 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34995540 |
gtactactctttggcttaatgtctccccaaatcgattattcaacttccttcggcacgagaaatccagaagcaaggtatgccctaacacttttttcttatt |
34995639 |
T |
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| Q |
163 |
aaaggcatagcaggacatgttctaacacatttacattc----tttgtttttattgaataattatagtgggataaac |
234 |
Q |
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| T |
34995640 |
aaaggcatagcaggacatgttctaacacatttacattctttttttttttttattgaatacttgtagtgggataaac |
34995715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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