View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20626_low_31 (Length: 245)
Name: NF20626_low_31
Description: NF20626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20626_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 26569005 - 26568768
Alignment:
| Q |
1 |
cctttccctacttaatggttatagtttcaaattctttgtttacttttattggtgaaacatgatgtactagtatcttaatggttgtagtttcaaatccttt |
100 |
Q |
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| T |
26569005 |
cctttcccaatttaatggttatagttttaaattctttgtttacttctattggtgaaacatgatgtactagtatcttaatggttgtagtttcaaatccttt |
26568906 |
T |
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| Q |
101 |
gtgagtgaaaaatattatgctgctaaagaattagtttgacaatgctttctactcagatggatgcttttctattgagtgtaacaatatcaaattgttctca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26568905 |
gtgagtgaaaaatattatgctgctaaagaattagtttgacaatgctttctactcagatggatgcttttctattgagtgtaacaatatcaaattgttctca |
26568806 |
T |
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| Q |
201 |
aattatctataagtagtttaattatatgtatgtatatt |
238 |
Q |
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| T |
26568805 |
aattatctataaatagtttaattatacgtaggtatatt |
26568768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 26567768 - 26567538
Alignment:
| Q |
8 |
ctacttaatggttatagtttcaaattctttgtttacttttattggtgaaacatgatgtactagtatcttaatggttgtagtttcaaatcctttgtgagtg |
107 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26567768 |
ctacttaatggttatagtttcaaattctttgtctacttctattggtgaaacatggtgtactagtatcttaatggttgtagtttcaaatcctctgtgagtg |
26567669 |
T |
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| Q |
108 |
aaaaatattatgctgctaaagaattagtttgacaatgctttctactcagatggatgcttttctattgagtgtaacaatatcaaattgttctcaaattatc |
207 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26567668 |
aaaaatattatgctgctaaagaattagtgcaacaatgctttctactgagatggatgcttttctattgagtgtaacaatatcatattgttctcaaattatc |
26567569 |
T |
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| Q |
208 |
tataagtagtttaattatatgtatgtatatt |
238 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
26567568 |
tataagtagtttaattatatgtatgtatatt |
26567538 |
T |
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