View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20626_low_34 (Length: 238)
Name: NF20626_low_34
Description: NF20626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20626_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 85 - 224
Target Start/End: Original strand, 26569114 - 26569253
Alignment:
| Q |
85 |
caacagcatgaagaatggaattgagttttgccttatccaatggtttctcaagatattcgtcaagtcctgcttccataaattttaccactatttctttctc |
184 |
Q |
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| T |
26569114 |
caacggcatgaagaatggaattgagttttgccttatccaatggtttctctagatattcgtcgagtcctgcttccataaattttaccactatttccttctc |
26569213 |
T |
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| Q |
185 |
ttccatagagtgtgaagatacaccaacaatggtgctagat |
224 |
Q |
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| T |
26569214 |
ttccatagagtgtgaagatacaccaacaatggtgctagat |
26569253 |
T |
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Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 26569032 - 26569084
Alignment:
| Q |
3 |
tgttattcaattccttgcattcattgtacttttgttcattccatcttgtgagg |
55 |
Q |
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| T |
26569032 |
tgttattcaattccttgcattcattgtacttttgttcattcaatcttgtgagg |
26569084 |
T |
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